View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_105 (Length: 206)

Name: NF10466_low_105
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_105
NF10466_low_105
[»] chr6 (2 HSPs)
chr6 (18-192)||(34431354-34431528)
chr6 (90-154)||(34544421-34544486)
[»] chr4 (6 HSPs)
chr4 (89-163)||(2103201-2103276)
chr4 (89-154)||(39276510-39276576)
chr4 (89-154)||(42617740-42617805)
chr4 (89-164)||(41173901-41173978)
chr4 (90-142)||(52327445-52327498)
chr4 (109-164)||(34414402-34414458)
[»] chr3 (3 HSPs)
chr3 (89-154)||(9198051-9198117)
chr3 (92-129)||(32326016-32326053)
chr3 (89-148)||(9780498-9780558)
[»] chr1 (6 HSPs)
chr1 (89-154)||(1714042-1714108)
chr1 (89-166)||(3949641-3949720)
chr1 (89-149)||(21516512-21516573)
chr1 (89-162)||(28870475-28870550)
chr1 (89-149)||(3160991-3161052)
chr1 (87-143)||(31795353-31795410)
[»] chr8 (4 HSPs)
chr8 (89-148)||(43408677-43408737)
chr8 (89-154)||(35764722-35764788)
chr8 (104-139)||(38282994-38283029)
chr8 (89-149)||(2111017-2111078)
[»] chr2 (4 HSPs)
chr2 (87-164)||(30804378-30804456)
chr2 (104-154)||(31854810-31854861)
chr2 (93-146)||(42139530-42139584)
chr2 (87-154)||(9613755-9613823)
[»] scaffold0010 (1 HSPs)
scaffold0010 (89-149)||(166741-166802)
[»] chr5 (2 HSPs)
chr5 (95-154)||(1786887-1786947)
chr5 (89-149)||(28363542-28363603)
[»] scaffold0027 (1 HSPs)
scaffold0027 (89-159)||(8069-8139)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 34431528 - 34431354
Alignment:
Q  18 cttattagcttatagtgttgtttaataagctagttcaagtagcgtgtttgcgtttgagcttataacttataattgaatttgtagtgtttggcaaaattaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431528 cttattagcttatagtgttgtttaataagctagttcaagtagcgtgtttgcgtttgagcttataacttataattgaatttgtagtgtttggcaaaattaa 34431429  T
Q  118 tagttgaactagttttaaatatgaaatgacatgaaaagatatgtttagtgttgtttttgttagttaaggcctatg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431428 tagttgaactagttttaaatatgaaatgacatgaaaagatatgtttagtgttgtttttgttagttaaggcctatg 34431354  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 34544486 - 34544421
Alignment:
Q  90 ttgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacatgaaaa 154  Q
    ||||||||||||||||||  | ||||| | |||||||||| || ||||||||||||||||| ||||    
T  34544486 ttgaatttgtagtgtttgatacaattagtggttgaactagcttataaatatgaaatgacataaaaa 34544421  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 2103201 - 2103276
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaac-tagttttaaatatgaaatgacatgaaaagatatgttt 163  Q
    |||||||||||||||||||| ||||||||| |||||||  | || ||||||| ||||||||| |||||||||||||    
T  2103201 attgaatttgtagtgtttggtaaaattaatggttgaacaaacttataaatataaaatgacataaaaagatatgttt 2103276  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 39276576 - 39276510
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacatgaaaa 154  Q
    |||||||||||||||||||| ||||||| | |||||||||| || ||||| | ||||||||| ||||    
T  39276576 attgaatttgtagtgtttggtaaaattagtggttgaactagcttataaatcttaaatgacataaaaa 39276510  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 42617805 - 42617740
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacatgaaaa 154  Q
    |||||||||||||||||| | ||| ||||  ||||||||| ||| ||||||||||||||||||||||    
T  42617805 attgaatttgtagtgtttagtaaa-ttaacggttgaactaatttataaatatgaaatgacatgaaaa 42617740  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 41173978 - 41173901
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacatga-aaagatatgttta 164  Q
    |||||||||||| ||||||| |||||||    ||||||||| || ||||||||||||||||| | |||||||||||||    
T  41173978 attgaatttgtattgtttggtaaaattatcgattgaactagcttgtaaatatgaaatgacataacaaagatatgttta 41173901  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 52327498 - 52327445
Alignment:
Q  90 ttgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaa 142  Q
    ||||||||||||||||||| |||||||  ||||||||||| || ||||||||||    
T  52327498 ttgaatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 34414458 - 34414402
Alignment:
Q  109 caaaattaatagttgaactagttt-taaatatgaaatgacatgaaaagatatgttta 164  Q
    |||||||||| ||||||||| ||| ||||||||||| ||| | ||||||||||||||    
T  34414458 caaaattaatggttgaactattttataaatatgaaacgacgtaaaaagatatgttta 34414402  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 9198051 - 9198117
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacatgaaaa 154  Q
    ||||||| |||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| ||||    
T  9198051 attgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacataaaaa 9198117  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 32326016 - 32326053
Alignment:
Q  92 gaatttgtagtgtttggcaaaattaatagttgaactag 129  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  32326016 gaatttgtagtgtttggtaaaattagtagttgaactag 32326053  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 9780498 - 9780558
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgaca 148  Q
    |||| ||||||| ||||||| ||||||||  ||||||||||||| |||||| |||||||||    
T  9780498 attggatttgtaatgtttggtaaaattaacggttgaactagtttataaatacgaaatgaca 9780558  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 1714042 - 1714108
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacatgaaaa 154  Q
    |||||||||||||||||||| ||||||||  |||||| |||||| ||||||||||||||||| ||||    
T  1714042 attgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaaaa 1714108  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 3949641 - 3949720
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacat-gaaaagatatgtttagt 166  Q
    |||||||||||||||||||| |||||||    |||||||| ||| |||||||||||||||||  ||||||||||||||||    
T  3949641 attgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgacataaaaaagatatgtttagt 3949720  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 21516512 - 21516573
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacat 149  Q
    ||||||||||| |||||||| ||||||| | |||||| ||| ||||||||||||||||||||    
T  21516512 attgaatttgttgtgtttggtaaaattagtggttgaaatagcttttaaatatgaaatgacat 21516573  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 28870475 - 28870550
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacat-gaaaagatatgtt 162  Q
    ||||||||| |||||||||| |||||||| ||||||||||| || |||| ||||||| ||||  ||||||||||||    
T  28870475 attgaatttttagtgtttggtaaaattaacagttgaactagcttataaaaatgaaattacataaaaaagatatgtt 28870550  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 3161052 - 3160991
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacat 149  Q
    |||||||||||||||||||| ||||||||   |||||||||  | |||||||||||||||||    
T  3161052 attgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaatgacat 3160991  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 31795353 - 31795410
Alignment:
Q  87 taattgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaa 143  Q
    |||||||||||||||||||||| |||| |||  |||||||||| || |||||||||||    
T  31795353 taattgaatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaa 31795410  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 43408737 - 43408677
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgaca 148  Q
    |||||||||||||||||||| ||||||| || ||||||||| || ||||||||||||||||    
T  43408737 attgaatttgtagtgtttggtaaaattagtaattgaactagcttataaatatgaaatgaca 43408677  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 35764788 - 35764722
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacatgaaaa 154  Q
    |||||||||| ||||||||| |||||||   ||||||||||||| ||||||||||||||||| ||||    
T  35764788 attgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaatgacataaaaa 35764722  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 38283029 - 38282994
Alignment:
Q  104 tttggcaaaattaatagttgaactagttttaaatat 139  Q
    |||||||||||||||||||||| |||||||||||||    
T  38283029 tttggcaaaattaatagttgaattagttttaaatat 38282994  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 2111078 - 2111017
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacat 149  Q
    |||||||||| ||||||||| |||||||   |||||||||| || |||||||||||||||||    
T  2111078 attgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacat 2111017  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 30804378 - 30804456
Alignment:
Q  87 taattgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacatgaaaagatatgttta 164  Q
    |||||||||||||||||||| | |||||||   |||||||||| || ||| |||||||||||||||| | |||||||||    
T  30804378 taattgaatttgtagtgtttcgtaaaattagcggttgaactagattataagtatgaaatgacatgaacatatatgttta 30804456  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 31854861 - 31854810
Alignment:
Q  104 tttggcaaaattaatagttgaactagttt-taaatatgaaatgacatgaaaa 154  Q
    ||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  31854861 tttggtaaaataaattgttgaactagtttataaatatgaaatgacatgaaaa 31854810  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 42139584 - 42139530
Alignment:
Q  93 aatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatga 146  Q
    |||||||||||||||| |||||||  ||||||||||| || ||||||||||||||    
T  42139584 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaaatga 42139530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 9613823 - 9613755
Alignment:
Q  87 taattgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacatgaaaa 154  Q
    ||||||||||| || ||||||| ||||| ||| | |||||||  || ||||||||||||||||||||||    
T  9613823 taattgaatttatattgtttggtaaaatcaatggctgaactatcttataaatatgaaatgacatgaaaa 9613755  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 166802 - 166741
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactag-ttttaaatatgaaatgacat 149  Q
    |||||||||||||||||||| |||||||   |||||||||| || |||||||||||||||||    
T  166802 attgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacat 166741  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 1786887 - 1786947
Alignment:
Q  95 tttgtagtgtttggcaaaattaatagttgaactagt-tttaaatatgaaatgacatgaaaa 154  Q
    |||||||||||||||||||| ||| |||||||||||   ||||||||||||||||| ||||    
T  1786887 tttgtagtgtttggcaaaatcaatggttgaactagtcgataaatatgaaatgacataaaaa 1786947  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 28363603 - 28363542
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttt-taaatatgaaatgacat 149  Q
    |||||||||||||||||||| || ||||   ||||||||||||| ||| |||||||||||||    
T  28363603 attgaatttgtagtgtttggtaatattagctgttgaactagtttataagtatgaaatgacat 28363542  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 8139 - 8069
Alignment:
Q  89 attgaatttgtagtgtttggcaaaattaatagttgaactagttttaaatatgaaatgacatgaaaagatat 159  Q
    |||||||||||||||||||  ||||||| | |||| ||||  || |||||||||||||||| |||| ||||    
T  8139 attgaatttgtagtgtttgataaaattagttgttgcactaccttaaaatatgaaatgacataaaaaaatat 8069  T

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