View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_11 (Length: 565)
Name: NF10466_low_11
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 3035546 - 3036085
Alignment:
| Q |
19 |
gttaggcatataatcatacaacagttagtgcaatcatgaatatacactcaagtcattagtagatgaataaaatagaatgaatcatcacattcttccattg |
118 |
Q |
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| T |
3035546 |
gttaggcatataatcatacaacagttagtgcaatcatgaatatacactcaagtcattagtacatgaataaaatagaat----catcacattcttccattg |
3035641 |
T |
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| Q |
119 |
attcaattaattagagactaacacgatgatcctaagtttctcaaaatacatgcaggaacttgatccacgtttatcacacgttcaccataggnnnnnnnnn |
218 |
Q |
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| T |
3035642 |
attcagttaattagagactaacacgatgatcctaagtttctcaaaatacatgcaggaacttggtccacgtttatcacacgtgcaccataggaaaaaaaaa |
3035741 |
T |
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| Q |
219 |
---catataaatatgacaacagtcctaccttatttttggtaaaagacaataatccaaccttaacttacaagcacaacnnnnnnnnnnnnnnnnntgccta |
315 |
Q |
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| T |
3035742 |
aaacatatagctatgacaacagtcccatcttatttttggtaaaagacaataatccaaccttaacttacaagcacaacaaaaaaataataaaaaatgccta |
3035841 |
T |
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| Q |
316 |
atatgatgtaaatatactatccagcacactatactgttaannnnnnnacacaattttgtttctgttgtaaatatatatgtacctaaactatgcatgatta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035842 |
atatgatgtaaatatactatccagcacactatactgttaatttttttacacaattttgtttctgttgtaaatatatatgtacctaaactatgcatgatta |
3035941 |
T |
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| Q |
416 |
acttaactagcatcatggttaatcatatgcatgtaatggtttaaggattcttgtctttgcaacctcatttgctggttgaacttacgtatgaaagcttcaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035942 |
acttaactagcatcatggttaatcatatgcatgtaatggtttaaggattcttgtctttgcaacctcatttgctggttgaacttacgtatgaaagcttcaa |
3036041 |
T |
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| Q |
516 |
cgcgtttattcaactcgtcttgactcaacgatggttcttctctc |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3036042 |
cgcgtttattcaactcgtcttgactcaacgatggttcttttctc |
3036085 |
T |
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