View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_13 (Length: 555)
Name: NF10466_low_13
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Complemental strand, 7163024 - 7162499
Alignment:
| Q |
13 |
gagatgaagggacggaaggaggctgttgtaaattccattaaactcaaaccaacatcaagagccaaaataagatacacaagccacaaaatgatactattga |
112 |
Q |
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| T |
7163024 |
gagatgaagggagggaaggaggctgttgtaaattccattaaactcaaaccaacatcaagagccaaaataagatacacaagccacaaaatgatactattga |
7162925 |
T |
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| Q |
113 |
aaaaggcaattaagaaatcaatggagaagaagggaggaaaggaggcaaagtttgctaagacgatgaggataattaagccgaaacgctcaaaaccaaaacg |
212 |
Q |
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| T |
7162924 |
aaaaggcaattaagaaatcaatggagaagaagggaggaaaggaggcaaagtttgctaagacgatgaggataattaagccggaacgctcaaaaccaaaacg |
7162825 |
T |
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| Q |
213 |
tcctcgtcgtctcgcctttaaaatccgtccttctagattatccactatgtctaattctcaagacttgcccatcattcaaccaggtcagtttatcactaat |
312 |
Q |
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| T |
7162824 |
tcctcgtcgtctcgcctttaaaatccgtccttctagattatccactatgtctaattctcaagacttgcccatcattcaaccaggtcagttgatcactaat |
7162725 |
T |
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| Q |
313 |
tctaaagacattccgaatcattcattagtttatctacctaatttggattctattgctggatacacatgcttatcggattgaaatatttcaattaatagca |
412 |
Q |
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| T |
7162724 |
tctaaagacattccgaatcattcattagtttatctacctaatttggattctattgctggatacacatgcatatcggattgaaatatttcaattaatagca |
7162625 |
T |
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| Q |
413 |
ctagttcaattgaacttatctatttggcatagaatataatcgtcgaagcttagtcactgctctgcacatcaaagataatacatattatagaattgtgaat |
512 |
Q |
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| T |
7162624 |
ctagttcaattgaacttatctatttggcatagaatataatcgtcgaagcttagtcactgatctgcacatcaaagataatacatattatagaattgtgaat |
7162525 |
T |
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| Q |
513 |
aaagcaaatgtagatacgactaaatt |
538 |
Q |
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| T |
7162524 |
aaagcaaatgtagatacgactaaatt |
7162499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 7145919 - 7145861
Alignment:
| Q |
100 |
atgatactattgaaaaaggcaattaagaaatcaatggagaagaagggaggaaaggaggc |
158 |
Q |
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| T |
7145919 |
atgacactcttgagaaaggcaatgaagaaatcaatggagaagaagggaggtaaggaggc |
7145861 |
T |
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