View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_15 (Length: 517)
Name: NF10466_low_15
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 33424838 - 33425138
Alignment:
| Q |
1 |
ttgatcaaaatttgagtttggaaaatatttatctctaagtgtagaaattaactttnnnnnnntgagtgtcaaaattttatttcctagaataaaatctcaa |
100 |
Q |
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| T |
33424838 |
ttgatcaaaatttgattttggaaaatatttctctctaaatgtagaaattaactttaaaaaaatgagtgtcaaaattttatttcctagaataaaatctcaa |
33424937 |
T |
|
| Q |
101 |
tcaaaggaatagcaagttagcaaatgttattgttttgatttgatttgatgaattgtgcatatcaacttaggctatatatagttgtcatgtgtgtgtgtat |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33424938 |
tcaaaggaatagcaagttagcaaatgtaattgttttgatttgatttgatgaattgtgcatatcaacttaggctatatatagttgtcatgtgtgggtgtat |
33425037 |
T |
|
| Q |
201 |
tgattttatcgtcacaacaataatagaatatttgtttgcttattataaacggctaccggatttggtcggc-ttttactaagacgaggttgaatttccaca |
299 |
Q |
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| T |
33425038 |
tgattttatcgtcacaacaataatagaatatttgtttgc-tattataaacggctaccggatttggtcggctttttactaagacgaggttgaatttccaca |
33425136 |
T |
|
| Q |
300 |
ac |
301 |
Q |
| |
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|| |
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| T |
33425137 |
ac |
33425138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 33410923 - 33411217
Alignment:
| Q |
1 |
ttgatcaaaatttgagtttggaaaatatttatctctaagtgtagaaattaactttnnnnnnntgagtgtcaaaattttatttcctagaataaaatctcaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33410923 |
ttgatcaaaatttgagtttggaaaatatttctct----------aaattaactttaaaaaaatgagtgtcaaaattttatttcctagaataaaatctcaa |
33411012 |
T |
|
| Q |
101 |
tcaaaggaatagcaagttagcaaatgttattgttttgatttgatttgatgaattgtgcatatcaacttaggc------tatatatagttgtcatgtgtgt |
194 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33411013 |
tcaaaggaatagcaagttagcaaatgtaattgttttgatttgatttgatgaattgtgcatatcaacttaggctatatatatatatagttgtcatgtgtgt |
33411112 |
T |
|
| Q |
195 |
gtgtattgattttatcgtcacaacaataatagaatatttgtttgcttattataaacggctaccggatttggtcggcttttactaagacgaggttgaattt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33411113 |
gtgtattgattttatcgtcacaacaataatagaatatttgtttgc-tattataaacggctaccggatttggtcggc-tttactaagacgaggttgaattt |
33411210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 33411494 - 33411628
Alignment:
| Q |
384 |
gttttcatttgtttttatttaaccacgtggacgatatgtgattttagaaagnnnnnnn-tatttgaagcaatttggcaataaacaaatatgcaatttagt |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33411494 |
gttttcatttgtttttatttaaccacgtggacgatatgtgattttagaaagaaaaaaaatatttgaagcaatttggcaataaacaaatatgcaatttagt |
33411593 |
T |
|
| Q |
483 |
gtggaccgtgtcaaagggaaatagaaaaagtatat |
517 |
Q |
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| T |
33411594 |
gtggaccgtgtcaaagggaaatagaaaaagtatat |
33411628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 33416952 - 33417062
Alignment:
| Q |
190 |
tgtgtgtgtattgattttatcgtcacaacaataatagaatatttgtttgcttattataaacggctaccggatttggtcggcttttactaagacgaggttg |
289 |
Q |
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||||||| ||| |||||||||| ||| ||||||||||| ||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33416952 |
tgtgtgtatatagattttatcgacacgacaataatagagtatatgtatgct-attatattcggctaccggatttggtcggcttttactaagacgaggttg |
33417050 |
T |
|
| Q |
290 |
aatttccacaac |
301 |
Q |
| |
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|||||||||||| |
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| T |
33417051 |
aatttccacaac |
33417062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 33425272 - 33425336
Alignment:
| Q |
453 |
atttggcaataaacaaatatgcaatttagtgtggaccgtgtcaaagggaaatagaaaaagtatat |
517 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
33425272 |
atttggcagtaaacaagtatgcaatatagtgtggaccgtgtcaaagggaaatagaaacagtatat |
33425336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 33416770 - 33416900
Alignment:
| Q |
1 |
ttgatcaaaatttgagtttggaaaatatttatctctaagtgtagaaattaactttnnnnnnntgagtgtcaaaattttattt----cctaga--ataaaa |
94 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||||||||| ||||| ||| |||||| |||||| |
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| T |
33416770 |
ttgatcaaaatttgagtttggaaaatatttctctctaattgtagaaattaac-ttaaaaaaatgagtgtcaagatttttttttctccctagaatataaaa |
33416868 |
T |
|
| Q |
95 |
tctcaatcaaaggaatagcaagttagcaaatg |
126 |
Q |
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||||||||||| ||||||| || ||||||||| |
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| T |
33416869 |
tctcaatcaaaagaatagctagctagcaaatg |
33416900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 516
Target Start/End: Original strand, 33417150 - 33417228
Alignment:
| Q |
442 |
tatttgaagcaatttggcaa-taaacaaatatgcaattt---agtgtggaccgtgtcaaagggaaatagaaaaagtata |
516 |
Q |
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|||||||||| ||||||||| |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
33417150 |
tatttgaagcgatttggcaaataaacaaatatgtaattttagagagtggaacgtgtcaaagggaaatagaaaaagtata |
33417228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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