View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_17 (Length: 472)
Name: NF10466_low_17
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 44567257 - 44566892
Alignment:
| Q |
1 |
aaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgt |
100 |
Q |
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| T |
44567257 |
aaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgt |
44567158 |
T |
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| Q |
101 |
cccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccg |
200 |
Q |
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| T |
44567157 |
cccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccg |
44567058 |
T |
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| Q |
201 |
cgacttagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaacaaatgaacctcaacaac |
300 |
Q |
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| T |
44567057 |
cgactaagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaacaaatgaacctcaacaac |
44566958 |
T |
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| Q |
301 |
aaagtacaatgattatatatatcatttcaattttgacttagcatactgtaaacatttcatagatca |
366 |
Q |
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| T |
44566957 |
aaagtacaatgattatatatatcatttcaattttgacttagcatactgtaaacatttcatagatca |
44566892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 36031503 - 36031769
Alignment:
| Q |
18 |
gataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaa |
117 |
Q |
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| T |
36031503 |
gataatagatacttacccacgagagataacactatcagaatacatgcacccaattgaactgctctgcggcttcccattttagtcacagcaattgtatgaa |
36031602 |
T |
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| Q |
118 |
cattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgacttagaaccccagg |
217 |
Q |
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| T |
36031603 |
cattttcagttaaagtggtagatccagttccagtaccccagagaccagccaaaacactagaaagaccttccagaccaattccgcgactaagaaccccagg |
36031702 |
T |
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| Q |
218 |
agttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaaca |
284 |
Q |
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| T |
36031703 |
agttggaggtctagatgctactaataatgaagatgcatgatatgagccaacctacaaagttaaaaca |
36031769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 44566895 - 44566843
Alignment:
| Q |
402 |
atcaataaaaacacaagtttcattctgcggtgctaaaatttcaaatcttattt |
454 |
Q |
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| T |
44566895 |
atcaataaaaacacaagtttcattctgcggtgctaaaatttcaaatcttattt |
44566843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 36031837 - 36031910
Alignment:
| Q |
319 |
atatcatttcaattttgacttagcatactgtaaacatttcatagatcagttaattctattatttgacttatcta |
392 |
Q |
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| T |
36031837 |
atatgatttaaattttgatatagcatattgttaatctttcatagatcagtaaactctattatttgacttatcta |
36031910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 20124273 - 20124129
Alignment:
| Q |
84 |
cggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaac |
183 |
Q |
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| T |
20124273 |
cggcttcccattttagtcacggcaattgtatgaacattttcggttaaagttgtagatccagttccagttccccagagaccagccaagacactacaaagac |
20124174 |
T |
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| Q |
184 |
cttctagaccaataccgcgacttagaaccccaggagttggaggtc |
228 |
Q |
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| T |
20124173 |
cttccaaaccaattcctcgactaagaactccaggagttggaggtc |
20124129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 16069361 - 16069436
Alignment:
| Q |
2 |
aatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaact |
77 |
Q |
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|||| ||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| ||||| ||||||||| |
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| T |
16069361 |
aatgaaacaacaaaatgataatagatacttagcaaagagagataatactgtcagaagacatgcacctaattgaact |
16069436 |
T |
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