View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_20 (Length: 458)
Name: NF10466_low_20
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 43695236 - 43695672
Alignment:
| Q |
18 |
aaaaacaaccatggtaaacaaggtatagtatgttaaccagatnnnnnnncacatttcatataatgattcaaaatataatactatgaacgacattgaaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695236 |
aaaaacaaccatggtaaacaaggtatagtatgttaaccagataaaaaaacacatttcatataatgattcaaaatataatactatgaacgacattgaaatg |
43695335 |
T |
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| Q |
118 |
aatccatacatagctataagtctatggtctccaactcccacatcccaattcagaatccaaatctctttcttcgaatcctttcattttcaacaaatttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43695336 |
aatccatacatagctataagtctatggtctccaactcccacatcccaattcagaatccaaatctctttcttcgaatcctttcgttttcaacaaatttctt |
43695435 |
T |
|
| Q |
218 |
tccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaacttttcaacttcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695436 |
tccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtccttcaacttttcaacttcta |
43695535 |
T |
|
| Q |
318 |
cggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaac |
417 |
Q |
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| T |
43695536 |
cggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaac |
43695635 |
T |
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| Q |
418 |
ttgaagatccttacaagcctggtcattcatctctctc |
454 |
Q |
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| T |
43695636 |
ttgaagatccttacaagcctggtcattcatgtctctc |
43695672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 43709432 - 43709558
Alignment:
| Q |
321 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
420 |
Q |
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|||||||||| || ||||| |||| ||||||| |||||||||| || || |||||||||| ||||||| ||| ||||||||||||||||||||| ||| |
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| T |
43709432 |
ctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttg |
43709531 |
T |
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| Q |
421 |
aagatccttacaagcctggtcattcat |
447 |
Q |
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| T |
43709532 |
aagatccttgcaagcttgatcattcat |
43709558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 43707708 - 43707834
Alignment:
| Q |
321 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
420 |
Q |
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| T |
43707708 |
ctttctccacaaaacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtataaaacttt |
43707807 |
T |
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| Q |
421 |
aagatccttacaagcctggtcattcat |
447 |
Q |
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| T |
43707808 |
agtatccttacaaggttggtcattcat |
43707834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 43696407 - 43696443
Alignment:
| Q |
399 |
caagttcctcccataaaacttgaagatccttacaagc |
435 |
Q |
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| T |
43696407 |
caagttcctcccagaaaatttgaagatccttacaagc |
43696443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 160 - 455
Target Start/End: Complemental strand, 15827530 - 15827235
Alignment:
| Q |
160 |
tcccaattcagaatccaaatctctttcttcgaatcctttcattttcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgccttt |
259 |
Q |
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||||||||||||||| |||||| ||||| ||| ||||| ||||||||| | |||||||||||||||||| | ||| |||| | ||| ||||| |
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| T |
15827530 |
tcccaattcagaatctaaatctaattctttgaaacctttggatttcaacaagtctctttccatgtcaagattcatctcagctgcaagcgacttaaccttt |
15827431 |
T |
|
| Q |
260 |
agcctccccgattccagctctaccgcagccacattgtccttcaacttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaa |
359 |
Q |
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||||| || ||| ||||||| | ||| || ||||||| ||||||| | || | |||||||||| || ||||| |||||||||||| | |||| |
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| T |
15827430 |
agcctttccatttcaagctctaaaactaccatgttctccttcatcttttcagcctccagagctttctccatgtatctttttattcctaaagcatagtgaa |
15827331 |
T |
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| Q |
360 |
catggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatctctctcg |
455 |
Q |
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| T |
15827330 |
catgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaacttgaagatccttacaagcttgttcattcatgtctctcg |
15827235 |
T |
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