View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_24 (Length: 424)
Name: NF10466_low_24
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_24 |
 | |
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| [»] scaffold0122 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 39439448 - 39439041
Alignment:
| Q |
1 |
ttttcatttatatgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactttctaattttatttgtctgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
39439448 |
ttttcatttatatgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactttctaattttatttgtcttaa |
39439349 |
T |
|
| Q |
101 |
aatatacaaagaaaatccaattaaagcaacacttcggagcaatattgcaaagcttcataactatattgtatcctctctacaactataacaacaactcagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39439348 |
aatatacaaagaaaatccaattaaagcaacacttctgaccaatattgcaaagcttcataactatatcatatcctctctacaactataacaacaactcagc |
39439249 |
T |
|
| Q |
201 |
tagtaattgagtcacagtttgttaagtgtgctaaaatatcactttcttttaaacaactc-nnnnnnnggttgctcgtttttctgctgaagattactacat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
39439248 |
tagtaattgagtcacagtttgttaagtgtgctaaaatatcattttcttttaaacaactcttttttttggttgctcgtttttctgctaaagattactacat |
39439149 |
T |
|
| Q |
300 |
gattaaactcaattatatgtcaaatttgcataccatgttggtaagacaacaccaagaggccaagcctactcaaatattgatttgtcaatttgtggagttt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39439148 |
gattaaactcaattatatgtcaaatttgcataccatgttggtaagacaaaaccaagaggccaagcctactcaaatattgatttgtcaatttgtggagttt |
39439049 |
T |
|
| Q |
400 |
cacctttt |
407 |
Q |
| |
|
|||||||| |
|
|
| T |
39439048 |
cacctttt |
39439041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 19814744 - 19814334
Alignment:
| Q |
1 |
ttttcatttatatgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactt-tctaattttatttgtctga |
99 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
19814744 |
ttttaatttatatgtttgctcatttcttcactcttttgtattattaaatatatgcattcaactaaaacccttcaacactaatctaattttatttgtcata |
19814645 |
T |
|
| Q |
100 |
aaatata--caaagaaaatccaattaaagcaacacttcggagcaatattgcaaagcttcataactatattgtatcctctctacaactataacaacaactc |
197 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| | || | ||||||||||||||||||||| | ||| ||| ||||||||||||||||||| ||||| |
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|
| T |
19814644 |
aaatatatacaaagaaaattcaattaaagcaacgcctcataccaatattgcaaagcttcataattgtatcatattctctctacaactataacaataactc |
19814545 |
T |
|
| Q |
198 |
agctagtaattgagtcacagtttgttaagtgtgctaaaatatcactttcttttaaacaactc-nnnnnnnggttgctcgtttttctgctgaagattacta |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||| ||||||||| || |||||||||| |
|
|
| T |
19814544 |
agctagtaattgagtcacagtttgttaagtgtgctaaaagatcactttctttt-aataactcttttttttggttgcccgtttttctactcaagattacta |
19814446 |
T |
|
| Q |
297 |
catgattaaactcaattatatgtcaaatttgcataccatgttggtaagacaacaccaagaggccaagcctactcaaatattgatttgtcaa-tttgtgga |
395 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
19814445 |
cgtgattaaactcaattatatgtcaaattttcataccatgttggtaagacaacaccaagaggccaaccctactcaaatattgatttgtcaattttgtgga |
19814346 |
T |
|
| Q |
396 |
gtttcacctttt |
407 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19814345 |
gttttacctttt |
19814334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 31049 - 30643
Alignment:
| Q |
1 |
ttttcatttatatgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactttctaattttatttgtctgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |
|
|
| T |
31049 |
ttttcatttatatgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaatactatctaattttatttgtcttaa |
30950 |
T |
|
| Q |
101 |
aatatacaaagaaaatccaattaaagcaacacttcggagcaatattgcaaagcttcataactatattgtatcctctctacaactataacaacaactcagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30949 |
aatatacaaagaaaatccaattaaagcaacacttcacaccaatattgcaaagcttcataactgtatcgtatcctctctacaactataacaacaactcagc |
30850 |
T |
|
| Q |
201 |
tagtaattgagtcacagtttgttaagtgtgctaaaatatcactttcttttaaacaactc-nnnnnnnggttgctcgtttttctgctgaagattactacat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
30849 |
tagtaattgagtcacagtttgttaagtgtgctaaaagatcactttctttt-aacaactcttttttttggttgcctgtttttctgctgaagattactacgt |
30751 |
T |
|
| Q |
300 |
gattaaactcaattatatgtcaaatttgcataccatgttggtaagacaacaccaagaggccaagcctactcaaatattgatttgtcaatttgtggagttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750 |
gattaaactcaattatatgtcaaatttgcataccatgttggtaagacagaaccaagaggccaagcctactcaaatattgatttgtcaatttgtggagttt |
30651 |
T |
|
| Q |
400 |
cacctttt |
407 |
Q |
| |
|
|||||||| |
|
|
| T |
30650 |
cacctttt |
30643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 14188229 - 14187827
Alignment:
| Q |
1 |
ttttcatttatatgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactttctaattttatttgtctgaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
|
|
| T |
14188229 |
ttttcatttatatatttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacctttcaacactatctaattttatttgtcttaa |
14188130 |
T |
|
| Q |
101 |
aatatacaaagaaaatccaattaaagcaacacttcggagcaatattgcaaagcttcataactatattgtatcctctctacaactataacaacaactcagc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14188129 |
aatatacaaagaaaattcaattaaagtaacacttcagaccaatattgcaaagcttcataactgtatcgtatcctctctacaactataacaacaactcagc |
14188030 |
T |
|
| Q |
201 |
tagtaattgagtcacagtttgttaagtgtgctaaaatatcactttcttttaaacaactcnnnnnnnggttgctcgtttttctgctgaagattactacatg |
300 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||| || |
|
|
| T |
14188029 |
tagtaattgagtaacagtttattaagtgtgctaaaaaatcactttctttt----aactttttttttggttgcccgtttttccgctgaagattactacgtg |
14187934 |
T |
|
| Q |
301 |
attaaactcaattatatgtcaaatttgcataccatgttggtaagacaacaccaagaggccaagcctactcaaatattgatttgtcaatttgtggagtttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14187933 |
attaaactcaattatatgtcaaatttgcataccatgttggtaagacaacaccaagaggccaagcctactcaaatattgatttgtcaatttgtggagtttc |
14187834 |
T |
|
| Q |
401 |
acctttt |
407 |
Q |
| |
|
||||||| |
|
|
| T |
14187833 |
acctttt |
14187827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 39096544 - 39096340
Alignment:
| Q |
12 |
atgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactttctaattttatttgtctgaaaatatacaaag |
111 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| || |||||||||| |
|
|
| T |
39096544 |
atgtttgctcacctcttcactgtcttgtattattaaatatatgcattcaactaaaatccttcaaaactgtctaattccatttgtcttaatatatacaaag |
39096445 |
T |
|
| Q |
112 |
aaaatccaattaaagcaacacttcggagcaatattgcaaagcttcataactatattgtatcctctctacaactataacaacaactcagctagtaattgag |
211 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||||| ||||| | |||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39096444 |
aaaatccaattaaagcaacgcttcataccaatattgcaaagcttcgtaactgcctgttatcttttctacaactgtaacaacaactcagctagtaattgag |
39096345 |
T |
|
| Q |
212 |
tcaca |
216 |
Q |
| |
|
||||| |
|
|
| T |
39096344 |
tcaca |
39096340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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