View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_25 (Length: 420)
Name: NF10466_low_25
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_25 |
 | |
|
| [»] scaffold0558 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 34651936 - 34651560
Alignment:
| Q |
18 |
atatttaactcagaattggcgtgatcatattatattccacagactttgttaatgttaagctacatagtctgttctcataatttcttacatttccattcat |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34651936 |
atatttaactcagaattggcatgatcatattatgttccacagactttgttaatattaagctacatagtctgttctcataatttcttacatttccattcat |
34651837 |
T |
|
| Q |
118 |
acctacacac--cctctacatctttctcaaccacattacattatgtgaagaaaatagctagtagtagtactagtactcaatcagaaaaatcttcaccaga |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34651836 |
acctacacacaccctctacatctttctcaaccacattacattatgtgaagaaaatagctagtagtagtactagtactcaatcagaaaaatcttcaccaga |
34651737 |
T |
|
| Q |
216 |
agatgtttcatgatctgcactcacattaacttccccttgtttaaatgccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtat |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34651736 |
agatgtttcatgatctacactcacattaacttccccctgtttaaatgccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtat |
34651637 |
T |
|
| Q |
316 |
ccctttccagtaatgtccttaacaacatggttatacttttctgaccaatgtgcagctgttggaactgccatctctgc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34651636 |
ccctttccagtaatgtccttaacaacatggttatacttttctgaccaatgtgcagctgttggaactgccatctctgc |
34651560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 392
Target Start/End: Complemental strand, 24407580 - 24407210
Alignment:
| Q |
21 |
tttaactcagaattggcgtgatcatattatattccacagactttgttaatgttaagctacatagtctgttctcataatttcttacatttccattcatacc |
120 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24407580 |
tttaactcaga-ttggcatgatcatattatgttccacagactttgttaatattaagctacatagtctgttctcataatttcttacatttccattcatacc |
24407482 |
T |
|
| Q |
121 |
tacacaccctctacatctttctcaaccacattacattatgtgaagaaaatagctagtagtagtactagtactcaatcagaaaaatcttcaccagaagatg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24407481 |
tacacaccctctacatctttctcaaccacattacattatgtgaagaaaatagctagtagtagtactagtactcaatcagaaaaatcttcaccagaagatg |
24407382 |
T |
|
| Q |
221 |
tttcatgatctgcactcacattaacttccccttgtttaaatgccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24407381 |
tttcatgatctgcactcacattaacttccccttgtttaaatgccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctt |
24407282 |
T |
|
| Q |
321 |
tccagtaatgtccttaacaacatggttatacttttctgaccaatgtgcagctgttggaactgccatctctgc |
392 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24407281 |
tctagtaatgtccttaacaacatggttatacttttctgaccaacgtgcagttgttggaactgccatctctgc |
24407210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0558 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0558
Description:
Target: scaffold0558; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 4593 - 4659
Alignment:
| Q |
21 |
tttaactcagaattggcgtgatcatattatattccacagactttgttaatgttaagctacatagtct |
87 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4593 |
tttaactcagaattggcatgatcatattatgttccacagactttgttaatattaagctacatagtct |
4659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University