View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_28 (Length: 408)
Name: NF10466_low_28
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 14743690 - 14743569
Alignment:
| Q |
243 |
tttttaattatatcaatcttttgtattcgtatatatctgaaaatctaaacctaaacgattgaattcaatttgttacaaaaaggtcaaattgttataggct |
342 |
Q |
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| T |
14743690 |
tttttaattatatcaatctttt--attagtatatatctgaaaatctaaacctaaacgattgaattcaatttgttacaaaaaggtcaaattgttatagaca |
14743593 |
T |
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| Q |
343 |
accatccaatctatgatgaaacaa |
366 |
Q |
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| T |
14743592 |
accgtccaatttatgatgaaacaa |
14743569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 14743951 - 14743900
Alignment:
| Q |
11 |
cataggttcgtatgttcgcttttttattgctctaacacatgtaaattatgaa |
62 |
Q |
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| T |
14743951 |
cataggttcgtatgttcgcttttttattgctctaacacatgtaaattatgaa |
14743900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 245 - 393
Target Start/End: Original strand, 17583411 - 17583553
Alignment:
| Q |
245 |
tttaattatatcaatcttttgtattcgtatatatctgaaaatctaaacctaaacgattgaattcaatttgttacaaaaaggtcaaattgttataggctac |
344 |
Q |
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| T |
17583411 |
tttaattatatcaatctttt--attcgtatatat--gaaaatctaaacctaaactattgaattcaatttgttacaaaaaggtcaaattgttatagacaac |
17583506 |
T |
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| Q |
345 |
catccaatctatgatgaaacaagactatatttaatgtcatggtcaaact |
393 |
Q |
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| T |
17583507 |
cgtccaatttatgat-aaattagactatattt-atgtcatggtcaaact |
17583553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 17583313 - 17583359
Alignment:
| Q |
240 |
caatttttaattatatcaatcttttgtattcgtatatatctgaaaatct |
288 |
Q |
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| T |
17583313 |
caatcttttattatatcaatctttt--attcgtatatatctgaaaatct |
17583359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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