View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_30 (Length: 368)

Name: NF10466_low_30
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_30
NF10466_low_30
[»] chr5 (16 HSPs)
chr5 (5-358)||(30060620-30060973)
chr5 (5-358)||(30749894-30750247)
chr5 (5-346)||(30400325-30400666)
chr5 (5-327)||(29853562-29853884)
chr5 (5-327)||(30436067-30436389)
chr5 (5-327)||(30712958-30713280)
chr5 (41-318)||(30483688-30483965)
chr5 (5-322)||(29872425-29872742)
chr5 (41-327)||(30338058-30338344)
chr5 (41-322)||(30241919-30242194)
chr5 (5-346)||(30206773-30207114)
chr5 (193-327)||(30676821-30676955)
chr5 (64-324)||(30475685-30475945)
chr5 (29-236)||(17983182-17983389)
chr5 (82-323)||(30521162-30521403)
chr5 (82-323)||(30561502-30561743)
[»] chr7 (1 HSPs)
chr7 (41-356)||(26707619-26707934)
[»] chr4 (3 HSPs)
chr4 (5-356)||(20296086-20296437)
chr4 (30-327)||(52352235-52352532)
chr4 (33-326)||(13616876-13617168)
[»] chr1 (2 HSPs)
chr1 (29-327)||(7581252-7581550)
chr1 (29-358)||(7099696-7100025)
[»] chr3 (1 HSPs)
chr3 (5-161)||(25293623-25293779)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 358
Target Start/End: Original strand, 30060620 - 30060973
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060620 acatcttcaacctccgtagtacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 30060719  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30060720 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaag 30060819  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30060820 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttcttt 30060919  T
Q  305 actatttcctttcctattgccacgagattagcacgctcttctttgtgatgtcca 358  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  30060920 actatctcctttcctattgccacgagatcagcacgctcttctttgtgatgtcca 30060973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 5 - 358
Target Start/End: Original strand, 30749894 - 30750247
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30749894 acatcttcaacctccatattacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaata 30749993  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30749994 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaag 30750093  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30750094 ttcactatctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgcttttgctgcaagaggcaatccattacatttcttt 30750193  T
Q  305 actatttcctttcctattgccacgagattagcacgctcttctttgtgatgtcca 358  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30750194 actatctcctttcctattgccacgagatcagcacgctcttctttgtaatgtcca 30750247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 30400325 - 30400666
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| || | ||||||   ||| ||||||||||    
T  30400325 acatcttcaacctccgtattaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaata 30400424  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||||||||||||| |||||||  |  | |||||||||||||||||||||||||| | |||||||  ||||||| |||| |||| |||||||    
T  30400425 tagcacaaaaagagaaacattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaag 30400524  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
     ||| |||||||||| | |||||||||||||||  | ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  30400525 ctcagtgtctttaatatcaagccattccttttctccattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttcttt 30400624  T
Q  305 actatttcctttcctattgccacgagattagcacgctcttct 346  Q
    ||||| |||||||||||||| || || |  ||||||||||||    
T  30400625 actatctcctttcctattgctacaagttctgcacgctcttct 30400666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 29853562 - 29853884
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||| |||  ||||||| |||||||||| ||||||||||||||||||||   |||||||||||| || ||||||||| |||| ||||||||||    
T  29853562 acatcttcaacgtccaaattacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaata 29853661  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||| ||||| ||||||||||||||||||| ||  | |||||||||||||||||||||||||||| |||||||  ||||||| | || |||| |||||||    
T  29853662 tagcgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaag 29853761  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
     |||||||||||||| | ||||||||||||||| || ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29853762 ctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgtttttgctgcaagaggcaatccattacatttcttt 29853861  T
Q  305 actatttcctttcctattgccac 327  Q
    || || |||||||||||| ||||    
T  29853862 acaatctcctttcctatttccac 29853884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 30436067 - 30436389
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||| |||  ||||||| |||||||||| ||| |||||||||||||||| | |||||||||||| ||||||||||||  ||| ||||||||||    
T  30436067 acatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaata 30436166  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||||||||||||| ||||||| ||  | |||||||||||||||||| |||||||| ||||||||  ||||||| | || |||| |||||||    
T  30436167 tagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaag 30436266  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
     |||||||||||||| | ||||||||||||||| || ||||||||| |||| ||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  30436267 ctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatccattacatttcttt 30436366  T
Q  305 actatttcctttcctattgccac 327  Q
    ||||| |||||||| ||| ||||    
T  30436367 actatctcctttccaatttccac 30436389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 30713280 - 30712958
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||| |||  ||||||| |||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||  ||| ||||||||||    
T  30713280 acatcttcaacgtccaaattacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaata 30713181  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||||||||||||| ||||||| ||  | ||||||||||||||||| ||||||||||||||||||  ||||||| | || |||| |||||||    
T  30713180 tagcacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaag 30713081  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
     |||||||||||||| | ||||||||| ||||| || ||||||||| |||| ||||  ||||||| |||||||||||| |||||||||||||||||||||    
T  30713080 ctcactgtctttaatatcaagccattcattttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagtggcaatccattacatttcttt 30712981  T
Q  305 actatttcctttcctattgccac 327  Q
     |||| |||||||||||| ||||    
T  30712980 gctatctcctttcctatttccac 30712958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 41 - 318
Target Start/End: Original strand, 30483688 - 30483965
Alignment:
Q  41 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 140  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||  |    
T  30483688 aatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30483787  T
Q  141 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 240  Q
     |||||||||||||||||||||||||||||| |||||  | ||||||| || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  30483788 ttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 30483887  T
Q  241 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcc 318  Q
     ||| |||||  ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30483888 attcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcc 30483965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 29872425 - 29872742
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||| |||  ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||| || ||||||| |  ||| ||||||||||    
T  29872425 acatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaata 29872524  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||| ||||||||||||||||| ||||||| ||  | |||||||||||||||||||||||||||| |||||||  ||||||| |  |||||| |||||||    
T  29872525 tagcgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaag 29872624  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
     |||||||| ||||| | ||||||||||||||| || ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29872625 ctcactgtccttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttcttt 29872724  T
Q  305 actatttcctttcctatt 322  Q
    || || ||||||||||||    
T  29872725 acaatctcctttcctatt 29872742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 41 - 327
Target Start/End: Complemental strand, 30338344 - 30338058
Alignment:
Q  41 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 140  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||  |    
T  30338344 aatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30338245  T
Q  141 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 240  Q
     |||||||||||||||||| ||||||||||| |||||  | ||||||| || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  30338244 ttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 30338145  T
Q  241 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccac 327  Q
     ||| |||||  ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  30338144 attcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccac 30338058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 41 - 322
Target Start/End: Complemental strand, 30242194 - 30241919
Alignment:
Q  41 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 140  Q
    |||||||||||||| || |||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||  |    
T  30242194 aatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagagttggtg 30242095  T
Q  141 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 240  Q
     |||||||||||||||||||||||||||||||||||      |||| | ||  ||  ||||||| || || |||||||||| ||||||||||| ||| ||    
T  30242094 ttaaataaaagtaactcaacctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 30242001  T
Q  241 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctatt 322  Q
     ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||    
T  30242000 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattacatttctttacaatctcctttcctatt 30241919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 30206773 - 30207114
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||||||| ||||  |||||||| |||| ||| ||||||||||||||||   ||||||||||||| | | || ||||| |||||||||||| |    
T  30206773 acatcttcaacctccatattttccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaaca 30206872  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||| ||||||  | |||| || ||  | ||||| |||||| ||||||||||||||||| |||||  |||| |||| || |||| |||||||    
T  30206873 tagcacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaag 30206972  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
    |||||| |||||||||| ||||||||| ||||| || ||||||||  |||||| || |||||||| || |||||||||||||||||||| ||||||||||    
T  30206973 ttcactctctttaatttcaagccattctttttcttcattccttgaactcattagacctcccaatgcttgtgctgcaagaggcaatccatcacatttcttt 30207072  T
Q  305 actatttcctttcctattgccacgagattagcacgctcttct 346  Q
    ||||| |||||||||||| |||| || |  ||||||||||||    
T  30207073 actatctcctttcctatttccacaagctctgcacgctcttct 30207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 327
Target Start/End: Complemental strand, 30676955 - 30676821
Alignment:
Q  193 taaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatcca 292  Q
    |||| ||||||| |||||||||||||| | |||||||||||| || || ||||||||| |||| ||||  ||||||| ||||||||||||||||||||||    
T  30676955 taaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatcca 30676856  T
Q  293 ttacatttctttactatttcctttcctattgccac 327  Q
    ||||||||||||||||| |||||||| ||| ||||    
T  30676855 ttacatttctttactatctcctttccaatttccac 30676821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 324
Target Start/End: Original strand, 30475685 - 30475945
Alignment:
Q  64 aatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctc 163  Q
    |||||| ||||||||||  |||||   ||||||||||||||| ||||||||||  |||||  | |||| ||  |  | ||||| |||||| || ||||||    
T  30475685 aatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggtcggtgttaaatgaaagtagcttaacctc 30475784  T
Q  164 aaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttc 263  Q
    || || ||||||||| |||| |||| || |||   ||| || | |||||||||||||| ||||||||| ||||||||  ||||||||  ||||| || ||    
T  30475785 aaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcattttcatcactccttgagcgcattagacctc 30475884  T
Q  264 ccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgc 324  Q
    |||||| || ||||||||||||||||||   ||| |||||||||||  |||| ||||||||    
T  30475885 ccaatgcttgtgctgcaagaggcaatcctccacacttctttactatcgccttacctattgc 30475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 17983182 - 17983389
Alignment:
Q  29 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 128  Q
    |||||||| || |||  |||||||||||||||   ||| | |||||| || | ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  17983182 ctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaatatagcacaaaaagcgaaacattgtt 17983281  T
Q  129 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 228  Q
    ||| || ||  | ||||| |||||| |||||||| | ||| || |||||  |||| ||||  | |||| |||| || || || |||||||||| || |||    
T  17983282 ttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagagctcgctctctttaatttcaaacca 17983381  T
Q  229 ttcctttt 236  Q
    ||||||||    
T  17983382 ttcctttt 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 323
Target Start/End: Complemental strand, 30521403 - 30521162
Alignment:
Q  82 gatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaa 181  Q
    |||||||  |||||||||||| || |||||||||| |||||||||||||| || ||    ||||| |||||| |||||||| ||||||||||||||  ||    
T  30521403 gatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaa 30521304  T
Q  182 ttttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaa 281  Q
    || ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  |||||  | |||||||| || ||||||||    
T  30521303 ttctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaa 30521204  T
Q  282 gaggcaatccattacatttctttactatttcctttcctattg 323  Q
    ||||||||||   ||| ||||||||||| || ||||||||||    
T  30521203 gaggcaatcccccacacttctttactatctcttttcctattg 30521162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 323
Target Start/End: Complemental strand, 30561743 - 30561502
Alignment:
Q  82 gatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaa 181  Q
    |||||||  |||||||||||| || |||||||||| |||||||||||||| || ||    ||||| |||||| |||||||| ||||||||||||||  ||    
T  30561743 gatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaa 30561644  T
Q  182 ttttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaa 281  Q
    || ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  |||||  | |||||||| || ||||||||    
T  30561643 ttctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaa 30561544  T
Q  282 gaggcaatccattacatttctttactatttcctttcctattg 323  Q
    ||||||||||   ||| ||||||||||| || ||||||||||    
T  30561543 gaggcaatcccccacacttctttactatctcttttcctattg 30561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 41 - 356
Target Start/End: Original strand, 26707619 - 26707934
Alignment:
Q  41 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 140  Q
    ||||||||||||||||||||   ||||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||  |    
T  26707619 aatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatagcacaaaaagagaaacattgctttagggttggtg 26707718  T
Q  141 gtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 240  Q
     ||||||||||||||||||||||||||||||||||||  | ||||| | || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  26707719 ttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 26707818  T
Q  241 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacgagattagcacgc 340  Q
     ||| |||||  |||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||| || || | | ||    
T  26707819 attcattgagaacattaaacctcccaatgcttttgctgcaagaggtaatccattacatttttttactatctcctttcctatttccacaagctttgtatgc 26707918  T
Q  341 tcttctttgtgatgtc 356  Q
    |||||| ||| |||||    
T  26707919 tcttctctgtaatgtc 26707934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 20296437 - 20296086
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    ||||||||||| |||  ||||||| |||||||||| |||||||||||||||||||||  |||||||||||| || | |||||||  ||| || |||||||    
T  20296437 acatcttcaacgtccaaattacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaata 20296338  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaag 204  Q
    |||||||||||||||||||||| ||||| | ||  | ||||||||||||||||| ||||||||||||||||||  | ||||| | || |||| |||||||    
T  20296337 tagcacaaaaagagaaacattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaaag 20296238  T
Q  205 ttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttcttt 304  Q
     ||| |||||||||| | | ||||||||||||| || ||| |||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  20296237 gtcattgtctttaatatcacgccattccttttcttcattcattgagaccattaaacctcccaatgcttttgctgcaagaggcaatccattacatttcttt 20296138  T
Q  305 actatttcctttcctattgccacgagattagcacgctcttctttgtgatgtc 356  Q
    ||||| |||||||||||| |||| || || | | |||||||| ||| |||||    
T  20296137 actatctcctttcctatttccacaagctttgtatgctcttctctgtaatgtc 20296086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 52352235 - 52352532
Alignment:
Q  30 tagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttt 129  Q
    |||| ||||| |||||||| |||||||| ||   |||||| || || ||||||||||| | ||||||||||||||| ||||| |||||||||||||||||    
T  52352235 tagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttt 52352334  T
Q  130 tagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccat 229  Q
    || || || || |||||  || |||||||||||||| |||||||||||  |||| ||||||||||||  |||||| |  || |||||||||| || ||||    
T  52352335 taaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccat 52352434  T
Q  230 tccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccac 327  Q
    ||||||||  | || ||||||  ||||| || ||| |||| || ||| ||||||||||||||   ||| |||||||||||  | || |||||||||||    
T  52352435 tccttttctccatttcttgagcgcattagacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcgctttgcctattgccac 52352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 326
Target Start/End: Original strand, 13616876 - 13617168
Alignment:
Q  33 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttag 132  Q
    ||||||| ||| ||||||||||||||||   ||||||||||||||||  ||||| || |||||| ||||||| | |||| |||| ||| |||||||| |     
T  13616876 atgaaataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaa 13616975  T
Q  133 ggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 232  Q
    || || || |||||  |||||||||| ||||||| |||| |||||  |||| ||||    |||||||||||| || || ||| |||||| |  |||||||    
T  13616976 ggttggcgataaat-gaagtaactcagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattcc 13617074  T
Q  233 ttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgcca 326  Q
    |||||  |  |||| ||||  |||| |   ||||||| || | ||||||||||||||||   ||| || || ||||| ||||||||||||||||    
T  13617075 ttttctccactcctcgagtgtattagagaccccaatgcttgtcctgcaagaggcaatcctccacactttttaactatctcctttcctattgcca 13617168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 327
Target Start/End: Complemental strand, 7581550 - 7581252
Alignment:
Q  29 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 128  Q
    ||||||||||| ||| ||||||||||||||||   ||||||||||||||| | ||||| || |||||| ||||||||||||||||||| |||||||||||    
T  7581550 ctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgtt 7581451  T
Q  129 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 228  Q
    ||| || ||  | ||||| |||||| ||||| |||| ||| |||||| |  |||| ||||  | |||||||||||| || || |||||||||| || |||    
T  7581450 ttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaacca 7581351  T
Q  229 ttccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccac 327  Q
    ||||||||| ||  ||||||||| ||||| ||  ||||||| || ||||||||||||||||||   |||||| |||||||| ||||| |||||||||||    
T  7581350 ttccttttcttcactccttgagtgcattagacaccccaatgcttgtgctgcaagaggcaatcccgcacatttttttactatctccttgcctattgccac 7581252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 7099696 - 7100025
Alignment:
Q  29 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 128  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||| | ||||| || ||||||| |||||||||||||||||| |||||||||||    
T  7099696 ctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgtt 7099795  T
Q  129 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatgaaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 228  Q
    ||| || ||  | |||||  ||||| |||||||||||||| ||||||||  |||| || |  | |||| |||| |  ||||| ||||||||||  | |||    
T  7099796 ttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttctaacca 7099895  T
Q  229 ttccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatttcctttcctattgccacg 328  Q
    | | ||||| ||  | ||||| | ||||| ||  || |||| || ||||||||||||||||||   ||| || |||||||| ||||| ||||||  |||     
T  7099896 tgctttttcttcacttcttgaatgcattagacaccctaatgcttgtgctgcaagaggcaatcctccacacttttttactatctccttgcctattttcaca 7099995  T
Q  329 agattagcacgctcttctttgtgatgtcca 358  Q
    || | ||||||||||||| ||| |||||||    
T  7099996 agctcagcacgctcttctctgtaatgtcca 7100025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 25293779 - 25293623
Alignment:
Q  5 acatcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaata 104  Q
    |||||||||||||||  |||  ||||||||||||| ||||||||||||||||||||   | |||||||||||||   ||||| || |||||| ||||| |    
T  25293779 acatcttcaacctccaaattttccctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaaca 25293680  T
Q  105 tagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacc 161  Q
    ||||||||||||  |||||| | |||| ||  |  | |||||||||||| |||||||    
T  25293679 tagcacaaaaagcaaaacatcgctttaaggtcggagttaaataaaagtagctcaacc 25293623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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