View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_32 (Length: 361)
Name: NF10466_low_32
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 23872362 - 23872029
Alignment:
| Q |
17 |
aaaaattcatccactcacggtctggaaacaaattggaagcataaacaaagaaatagaacatcatctgatacaagagcaagattgacgaaactatatagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23872362 |
aaaaattcatccactcacggtctggaaacaaattggaagcataaacaaagaaatagaacatcatctgatacaagagcaagattgacgaaactatatagaa |
23872263 |
T |
|
| Q |
117 |
agaagtgtctagtataagagcattcaacatatcaaaatttgattgagtttttctttttggttgagaaattgaatgaattatgtgtttgcctggtgggtgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23872262 |
agaagtgtctagtataagagcattcaacatatcaaaatttgattgagtttttctttttggttgagaaattgaatgaattatgtgttggcctggtgggtgc |
23872163 |
T |
|
| Q |
217 |
aaaggaactagttattgcatcacgaagataagcaagaggaatgaagctctaactgtaatagcttgccgtacaagtaactagcttagattagtttagttag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23872162 |
aaaggaactagttattgcatcacgaagataagcaagaggaatgaagctctaactgtaatagcttgccgtacaagtaactagcttagattagtttagttag |
23872063 |
T |
|
| Q |
317 |
ttactgagttgtaatcctatacttctaggttcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
23872062 |
ttactgagttgtaatcctatacttctaggttcat |
23872029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 350
Target Start/End: Original strand, 40280364 - 40280488
Alignment:
| Q |
227 |
gttattgcatcacgaagataagcaagaggaatgaagctctaactgtaatagcttgccgtacaagtaactagcttagattag-tttagttagttactgagt |
325 |
Q |
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| T |
40280364 |
gttattgcatcaggaagataagcaagaagaataaaaccctaactataatagcttaccttgcaagtaactagcttagattagttttagttagttactgagt |
40280463 |
T |
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| Q |
326 |
tgtaatcctatacttctaggttcat |
350 |
Q |
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| |||||| ||||||||||||| |
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| T |
40280464 |
aatgttcctatgcttctaggttcat |
40280488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 9849420 - 9849360
Alignment:
| Q |
286 |
acaagtaactagcttagattagtttagttagttactgagttgtaatcctatacttctaggt |
346 |
Q |
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|||| |||||| |||||| |||||||||||||||| ||||| | ||||||| ||||||||| |
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| T |
9849420 |
acaaataactaacttagaatagtttagttagttacagagttattatcctatgcttctaggt |
9849360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 18314490 - 18314414
Alignment:
| Q |
270 |
tgtaatagcttgccgtacaagtaactagcttagattagtttagttagttactgagttgtaatcctatacttctaggt |
346 |
Q |
| |
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|||||||||||| | |||||||||||||||||| |||||||||||||||| ||||| | ||||||| ||||||||| |
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| T |
18314490 |
tgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagttattatcctatgcttctaggt |
18314414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 25189706 - 25189646
Alignment:
| Q |
286 |
acaagtaactagcttagattagtttagttagttactgagttgtaatcctatacttctaggt |
346 |
Q |
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|||| |||||| |||||| |||||||||||||||| ||||| | ||||||| ||||||||| |
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| T |
25189706 |
acaaataactaacttagaatagtttagttagttacagagttattatcctatgcttctaggt |
25189646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 8368444 - 8368385
Alignment:
| Q |
289 |
agtaactagcttagattagttta--gttagttactgagttgtaatcctatacttctaggt |
346 |
Q |
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||||||||||||||| ||||||| ||||||||| ||||| | ||||||| ||||||||| |
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| T |
8368444 |
agtaactagcttagaatagtttatagttagttacagagttattatcctatgcttctaggt |
8368385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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