View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_34 (Length: 358)
Name: NF10466_low_34
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 45148832 - 45149164
Alignment:
| Q |
9 |
tggacatcaatggtgttttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaat |
108 |
Q |
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| T |
45148832 |
tggacagcaatggtgttt-gcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgccgggaaaaagagagatggcatacaat |
45148930 |
T |
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| Q |
109 |
gtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatga |
208 |
Q |
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| T |
45148931 |
gtgatgattgcaggatatgtgcaatacaagaaaatggatatggcaagggaattgtttgaggcaatgccttgtcggaatgtaggttcatggaataccatta |
45149030 |
T |
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| Q |
209 |
tcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatgg |
308 |
Q |
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| T |
45149031 |
tcagcggctatggtcagaacggagatattgctcaagctagggaattgtttgacatgatgactcagcgcgattgtgtatcttgggcggcaattattgctgg |
45149130 |
T |
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| Q |
309 |
ttatgctcagactggtcactatgaagaagttatg |
342 |
Q |
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| T |
45149131 |
ttatgctcagactggtcactatgaaaaagttatg |
45149164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 337
Target Start/End: Original strand, 45165284 - 45165520
Alignment:
| Q |
101 |
catacaatgtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaa |
200 |
Q |
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| T |
45165284 |
catacaatgcaatgattgcgggttatgtgcaaactaagaaaatggacatcgcaagggagttgtttgagtctatgccctgtcggaatataagttcatggaa |
45165383 |
T |
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| Q |
201 |
taccatgatcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaatt |
300 |
Q |
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| T |
45165384 |
taccatgattacaggctatggtcagattggagacattgctcaggctagaaaattctttgatatgatgccacagcgtgactgtgtatcttgggcggctatt |
45165483 |
T |
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| Q |
301 |
attgatggttatgctcagactggtcactatgaagaag |
337 |
Q |
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| T |
45165484 |
attgctggttatgctcagagcggtcactatgaagaag |
45165520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 24137068 - 24136738
Alignment:
| Q |
9 |
tggacatcaatggtgttttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaat |
108 |
Q |
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| T |
24137068 |
tggacaacaatggtgttt-gcatatgtgcatagtggaatgttggatgaagcgagaggagttttcgatgaaatgccgggaaaaagaaagatgacatacaat |
24136970 |
T |
|
| Q |
109 |
gtgatgattgtaggatatgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatga |
208 |
Q |
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| T |
24136969 |
gtgatgattgcatgatatgtgcaaaacaagaaaatggatatgg-aagggaattgtatgaggtaatgccttgtcagaatgtaggttcctggaa-accatga |
24136872 |
T |
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| Q |
209 |
tcaacggctatggtcagaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatgg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |||||||||| |||||||| |||||||||| ||| |
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| T |
24136871 |
tcaacggctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgtgcatcttgggaagcaattattgctgg |
24136772 |
T |
|
| Q |
309 |
ttatgctcagactggtcactatgaagaagttatg |
342 |
Q |
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||| ||| ||||||||||||||||| ||| |||| |
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| T |
24136771 |
ttaggctaagactggtcactatgaataagctatg |
24136738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 24134742 - 24134425
Alignment:
| Q |
25 |
tttgcatatgtgcagagtggaatgttggatgaagcgagaagagttttcgatgaaatgctgggaaaaagaaaaatgacatacaatgtgatgattgtaggat |
124 |
Q |
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| T |
24134742 |
tttgcatatgtgcagagtggaatgttggatcatgcgagaagagttttcgatgaaatgccgggaaaatgaaagatgacatacaatgtgatggttaagggaa |
24134643 |
T |
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| Q |
125 |
atgtgcaatacaataaaatggatatggcaagggaattgtttgaggcaatgccatgtcggaatgtaggttcatggaataccatgatcaacggctatggtca |
224 |
Q |
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| T |
24134642 |
atgtgcaatacaagcaaatggatatggcaagggaattgtttgaggcaatgccatgttggaatgtaggttcgtggaataccatgatcaacggctatgatca |
24134543 |
T |
|
| Q |
225 |
gaacgaagatattgctcaagctatgaaattgtttcacatgatggatccgcgcgattgtgtatcttgggtggcaattattgatggttatgctcagactggt |
324 |
Q |
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| T |
24134542 |
gaaaggaaatattgctcaagttggcaaattgtttgacatgatggctaaccgcgattgtgtatcttgggtggcaattattggtggttaggctcagactggt |
24134443 |
T |
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| Q |
325 |
cactatgaagaagttatg |
342 |
Q |
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| T |
24134442 |
cattatgaagaagctatg |
24134425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 24134238 - 24134191
Alignment:
| Q |
295 |
gcaattattgatggttatgctcagactggtcactatgaagaagttatg |
342 |
Q |
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| T |
24134238 |
gcaattattgatggttatgcacagactgatcactatgaagaagttatg |
24134191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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