View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_35 (Length: 350)
Name: NF10466_low_35
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 30836144 - 30836474
Alignment:
| Q |
1 |
gattcagtttcagttaaaccttgtttctcttcacaagaaccttttcactacttcggtgttttcgacggtcacggttgctctcatgtaagtannnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836144 |
gattcagtttcagttaaaccttgtttctcttcacaagaaccttttcactacttcggtgttttcgacggtcacggttgctctcatgtaagtatttttattt |
30836243 |
T |
|
| Q |
101 |
nnn-ccggcgacagatctgttaaattattttccggtgaagtgtgatgttaattgttttctcgttgttaattgttttttcaggttgctactatgtgtaaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30836244 |
ttttccggcgacagatctgttaaattattttccggtgaactgtgatgttaattgttttctcgttgttaatt---ttttcaggttgctactatgtgtaaag |
30836340 |
T |
|
| Q |
200 |
agagacttcacgaaattgtgaaggaagaaatgaacgaagcacaagagaatttagaatggaacaacaccatgcaacaaggctttgctcgcatggatgatga |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836341 |
agagacttcacgaaattgtgaaggaagaaatgaacgaaggacaagagaatttagaatggaacaacaccatgcaacaaggctttgctcgcatggatgatga |
30836440 |
T |
|
| Q |
300 |
agttcaaagatggaacagcagtagtcaaagtgtt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30836441 |
agttcaaagatggaacagcagtagtcaaagtgtt |
30836474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University