View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_36 (Length: 348)

Name: NF10466_low_36
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_36
NF10466_low_36
[»] chr3 (14 HSPs)
chr3 (1-320)||(1901978-1902297)
chr3 (1-320)||(1911424-1911743)
chr3 (33-290)||(35864077-35864334)
chr3 (84-320)||(21984209-21984445)
chr3 (117-267)||(11027175-11027325)
chr3 (75-276)||(7729708-7729908)
chr3 (105-242)||(31339880-31340017)
chr3 (149-320)||(54393254-54393428)
chr3 (46-283)||(10480401-10480639)
chr3 (158-300)||(52259689-52259831)
chr3 (31-128)||(44441778-44441875)
chr3 (143-261)||(49600729-49600847)
chr3 (158-261)||(34962274-34962377)
chr3 (200-261)||(44111249-44111310)
[»] chr2 (8 HSPs)
chr2 (36-320)||(28528939-28529223)
chr2 (33-276)||(44718840-44719081)
chr2 (100-232)||(42530893-42531033)
chr2 (29-128)||(42071527-42071626)
chr2 (204-276)||(42071417-42071489)
chr2 (182-303)||(21490265-21490384)
chr2 (184-261)||(7813549-7813624)
chr2 (143-256)||(947379-947492)
[»] chr6 (6 HSPs)
chr6 (45-317)||(6822518-6822790)
chr6 (31-174)||(11769760-11769903)
chr6 (77-254)||(18250755-18250933)
chr6 (199-298)||(33106823-33106920)
chr6 (31-147)||(33106707-33106823)
chr6 (143-298)||(6901536-6901697)
[»] chr8 (12 HSPs)
chr8 (100-308)||(40381594-40381802)
chr8 (114-276)||(42163974-42164136)
chr8 (31-232)||(14539388-14539589)
chr8 (105-320)||(37728356-37728571)
chr8 (72-316)||(3310531-3310775)
chr8 (189-261)||(2537200-2537272)
chr8 (143-298)||(12585655-12585810)
chr8 (45-128)||(1336280-1336363)
chr8 (194-317)||(16340198-16340319)
chr8 (265-320)||(1336146-1336201)
chr8 (154-256)||(15356060-15356162)
chr8 (31-67)||(40381827-40381863)
[»] chr5 (10 HSPs)
chr5 (31-317)||(15726860-15727146)
chr5 (31-317)||(15810705-15810991)
chr5 (84-320)||(29368477-29368713)
chr5 (45-247)||(4930660-4930861)
chr5 (203-320)||(22399404-22399520)
chr5 (207-257)||(17229004-17229054)
chr5 (119-161)||(38351726-38351768)
chr5 (100-161)||(17228914-17228975)
chr5 (224-268)||(27343174-27343218)
chr5 (234-276)||(40909995-40910037)
[»] chr1 (17 HSPs)
chr1 (82-312)||(30294091-30294321)
chr1 (45-316)||(27850435-27850707)
chr1 (35-259)||(21487306-21487530)
chr1 (182-289)||(37244915-37245022)
chr1 (31-128)||(46396444-46396541)
chr1 (147-218)||(5200333-5200404)
chr1 (31-134)||(42773370-42773473)
chr1 (201-261)||(29095842-29095902)
chr1 (45-134)||(37245038-37245128)
chr1 (194-231)||(42772340-42772377)
chr1 (142-209)||(42772392-42772459)
chr1 (258-320)||(46396620-46396682)
chr1 (149-222)||(1282281-1282354)
chr1 (31-128)||(1282356-1282452)
chr1 (149-222)||(1283312-1283385)
chr1 (31-128)||(1283387-1283483)
chr1 (180-261)||(31570500-31570581)
[»] chr7 (5 HSPs)
chr7 (31-320)||(23756472-23756763)
chr7 (143-298)||(22972847-22973002)
chr7 (144-261)||(33758395-33758512)
chr7 (199-256)||(33338293-33338348)
chr7 (42-96)||(46232378-46232432)
[»] chr4 (12 HSPs)
chr4 (31-250)||(13035532-13035747)
chr4 (45-320)||(22087635-22087913)
chr4 (149-320)||(47551993-47552166)
chr4 (158-261)||(46732653-46732755)
chr4 (154-300)||(27907223-27907367)
chr4 (110-174)||(35747008-35747072)
chr4 (34-128)||(47551897-47551991)
chr4 (177-260)||(24368009-24368092)
chr4 (258-320)||(26333241-26333303)
chr4 (143-317)||(13028646-13028815)
chr4 (31-129)||(13028978-13029076)
chr4 (193-259)||(6495746-6495814)
[»] scaffold0245 (2 HSPs)
scaffold0245 (149-222)||(7961-8034)
scaffold0245 (31-128)||(8036-8132)
[»] scaffold0229 (2 HSPs)
scaffold0229 (149-222)||(8289-8362)
scaffold0229 (31-128)||(8364-8460)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 1901978 - 1902297
Alignment:
Q  1 ttgtacaaatatcatttctcnnnnnnnnaatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcg 100  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1901978 ttgtacaaatatcatttctcttttttttaatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttg 1902077  T
Q  101 gcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902078 gtctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcat 1902177  T
Q  201 tgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902178 tgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattat 1902277  T
Q  301 tattgctataaatttttata 320  Q
    ||||||||||||||||||||    
T  1902278 tattgctataaatttttata 1902297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 1911424 - 1911743
Alignment:
Q  1 ttgtacaaatatcatttctcnnnnnnnnaatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcg 100  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1911424 ttgtacaaatatcatttctcttttttttaatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttg 1911523  T
Q  101 gcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911524 gtctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcat 1911623  T
Q  201 tgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911624 tgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattat 1911723  T
Q  301 tattgctataaatttttata 320  Q
    ||||||||||||||||||||    
T  1911724 tattgctataaatttttata 1911743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 33 - 290
Target Start/End: Original strand, 35864077 - 35864334
Alignment:
Q  33 gtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattct 132  Q
    |||||||| |||||||||||||||||| | ||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35864077 gtataatgtactaatagttgatatttttaccacattgccctcacttatcacaaatcatttctcttttggcctacacatatcatcatatatctcaaattct 35864176  T
Q  133 ttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagata-ttt 231  Q
    ||||| | ||||||||| ||||||||| | | |||||||||  ||||| ||||||| |||||||| ||||||||||| |||||||||||||||||| ||     
T  35864177 ttcttgataatatgaattttatcaagatttgaatgcgaaattgaatgagagatgatcggttaaatgattgtttagttgtttatatagagaaagatacttc 35864276  T
Q  232 tcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaa 290  Q
    || ||| |||||||||| | |||||||||  |||||||||||||| |||||||||||||    
T  35864277 tccttg-tattgaaaataaaaaaatcattgaaagtttccataatatgaaaaatcataaa 35864334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 320
Target Start/End: Original strand, 21984209 - 21984445
Alignment:
Q  84 aaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaag 183  Q
    ||||||||||||| | |||  ||| |||||||||||||||||||||||||| || | |||||||||||||||||||| ||||| |  |||| ||||  ||    
T  21984209 aaatcatttctctcttggctcacatatatcatcatatatctcaaattctttattgataatatgaatattatcaagaaccggatacataatcgaatgtgag 21984308  T
Q  184 atgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaa 283  Q
    ||||| |||||||| ||||||   ||||||||||| ||||| ||| ||| |||||||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  21984309 atgatcggttaaatgattgttcgattatttatataaagaaatatacttttattgatattgaaaatgagaaaaccattcaaagtttcaataatatgaaaaa 21984408  T
Q  284 tcataaaggacaattattattgctataaatttttata 320  Q
    |  || ||||||||||||| ||||| |||||||||||    
T  21984409 ttctagaggacaattattaatgctacaaatttttata 21984445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 11027175 - 11027325
Alignment:
Q  117 atatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttata 216  Q
    ||||||||||| || |||||| | ||||||||||||||||||||||| ||| |||||| ||||| |||||| || |||||| ||| ||||||||||||||    
T  11027175 atatatctcaacttttttcttcataatatgaatattatcaagaatcgaatgtgaaatcgaatgagagatgactgcttaaataattatttagttatttata 11027274  T
Q  217 tagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtt 267  Q
    ||| | |||||||||| ||||||||||||||||| |||||||||| |||||    
T  11027275 tagtgtaagatatttttattgatattgaaaatgataaaatcattcaaagtt 11027325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 276
Target Start/End: Original strand, 7729708 - 7729908
Alignment:
Q  75 acttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatc 174  Q
    |||||||| |||| |||||||| | || | |||| |||||||||||| ||||| |  |||||| | ||||||||||||||||||||| | |||| |||||    
T  7729708 acttatcacaaattatttctctcttgggccacacctatcatcatatagctcaattcatttcttgataatatgaatattatcaagaatagaatgcaaaatc 7729807  T
Q  175 aaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataa 274  Q
     | ||  ||||     ||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| || |||||||||    
T  7729808 gagtgggagatatcaagttaaatgattgtttaattatttatatagagaaatatatttttattgatattgaaaatgag-aaatcattcaaaatttccataa 7729906  T
Q  275 ta 276  Q
    ||    
T  7729907 ta 7729908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 31339880 - 31340017
Alignment:
Q  105 acacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtt 204  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||| ||||  |||||||||    ||| | |||||  ||||||| ||||||    
T  31339880 acacatatcatcatatatctcaaattctttctcgataatatgaatattatcaataatcaaatgcgaaattgtgtgagaaatgatcagttaaatgattgtt 31339979  T
Q  205 tagttatttatatagagaaagatattttcattgatatt 242  Q
    |||||| |||||| |||||||||||||| |||||||||    
T  31339980 tagttaattatattgagaaagatatttttattgatatt 31340017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 320
Target Start/End: Original strand, 54393254 - 54393428
Alignment:
Q  149 tattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaaga---tattttcattgatattgaa 245  Q
    |||||| |||| | |||| ||||||||| |   ||||||  |||||||| |||||||||||||||||||||| |||     | |||| ||||||||||||    
T  54393254 tattattaagatttggatacgaaatcaagtcggagatgaccggttaaataattgtttagttatttatatagataaaatgtttttttttattgatattgaa 54393353  T
Q  246 aatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    |||||||||||||||| |||||||||||||| ||| |||| || ||||||||| ||| ||||| |||||||||||    
T  54393354 aatgagaaaatcattcaaagtttccataatatgaataatcgtagaggacaatttttaatgctacaaatttttata 54393428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 10480639 - 10480401
Alignment:
Q  46 atagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaatat 145  Q
    |||||||| ||||||| ||||||  || ||||||||| | ||||||| ||| | ||| ||||  ||| ||||||||| |||||| ||||||| | |||||    
T  10480639 atagttgacattttgaccacatgatccacacttatcacatatcatttttctcttggcgtacatctatgatcatatatttcaaatcctttcttgataatat 10480540  T
Q  146 gaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaa 245  Q
    | |||||||||||||||  |||  ||||| | ||| | ||||  | |||||| |||||||||||||||||||||||||| |  |||| |||||||| |||    
T  10480539 gcatattatcaagaatcaaatgtcaaatcgactgagaaatgaccgtttaaatgattgtttagttatttatatagagaaaaaggttttaattgatatcgaa 10480440  T
Q  246 aatgag-aaaatcattctaagtttccataataggaaaaa 283  Q
    |||| | ||||| |||| |||||| ||||| | ||||||    
T  10480439 aatgcgaaaaataattcaaagttttcataaaatgaaaaa 10480401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 300
Target Start/End: Original strand, 52259689 - 52259831
Alignment:
Q  158 gaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatc 257  Q
    ||||||||||||||||| ||||  |||||| ||||||||| ||||||| ||| ||||||| |||  || |||||| ||||||||||| ||||||||||||    
T  52259689 gaatcggatgcgaaatcgaatgggagatgactggttaaatgattgtttggttgtttatatggagggaggtatttttattgatattgagaatgagaaaatc 52259788  T
Q  258 attctaagtttccataataggaaaaatcataaaggacaattat 300  Q
    |||| | ||||| | ||||  ||| ||| || |||||||||||    
T  52259789 attcaatgtttctagaatataaaacatcgtagaggacaattat 52259831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 44441875 - 44441778
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||| |  ||||||||| |||||||||||||||  | ||||||||| ||||||||||||| | |||  |||| |||||||||||||||||||    
T  44441875 tagtataatgtatcaatagttgacattttgatcacatggatcacacttatcacaaatcatttctctcttggcgcacacttatcatcatatatctcaaa 44441778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 49600847 - 49600729
Alignment:
Q  143 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 242  Q
    |||||| |||||||||| || | ||||||||| ||||   ||| | |||||| || ||||| |||||| ||||||||| | ||| ||||| ||||| |||    
T  49600847 tatgaagattatcaagactcagttgcgaaatcgaatgggtgattaatggttagatgattgtctagttacttatatagaaagagagatttttattgagatt 49600748  T
Q  243 gaaaatgagaaaatcattc 261  Q
    |||||||||||||||||||    
T  49600747 gaaaatgagaaaatcattc 49600729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 34962377 - 34962274
Alignment:
Q  158 gaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagata-ttttcattgatattgaaaatgagaaaat 256  Q
    ||||| |||| |||||| |||| || |||| || |||||| ||||||||||||||||||||||   ||||| |||| |||||||||||||| ||||||||    
T  34962377 gaatcagatgtgaaatcgaatggaaaatgactg-ttaaatgattgtttagttatttatatagaatgagatactttttattgatattgaaaacgagaaaat 34962279  T
Q  257 cattc 261  Q
    |||||    
T  34962278 cattc 34962274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 44111310 - 44111249
Alignment:
Q  200 ttgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 261  Q
    ||||||||||| |||||||||||  |||||||| ||||| || |||||||| ||||| ||||    
T  44111310 ttgtttagttacttatatagagagtgatatttttattgagatcgaaaatgaaaaaattattc 44111249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 36 - 320
Target Start/End: Original strand, 28528939 - 28529223
Alignment:
Q  36 taatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttc 135  Q
    ||||| || |||| |||| ||||||||||||||| || ||||||||| |||| |||||||||| || | |||||||||||||||||||||||||||||||    
T  28528939 taatgtaccaataattgacattttgatcacatggtccacacttatcagaaataatttctcttttggtccacacatatcatcatatatctcaaattctttc 28529038  T
Q  136 ttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcat 235  Q
    || | ||||||| |||||||||||||||||||| ||||  ||||| ||||||| ||||| || |||||||||||||||||| ||||||| ||||||| ||    
T  28529039 ttgacaatatgattattatcaagaatcggatgcaaaattgaatgagagatgatcggttacatgattgtttagttatttatacagagaaaaatatttttat 28529138  T
Q  236 tgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    ||||||||||||||| |||||| ||  ||||||| |||||| ||||||||  | || |||||||||| ||||| | |||||||||    
T  28529139 tgatattgaaaatgataaaatcttttaaagtttctataatatgaaaaatcggagagaacaattattaatgctacagatttttata 28529223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 33 - 276
Target Start/End: Complemental strand, 44719081 - 44718840
Alignment:
Q  33 gtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattct 132  Q
    |||||||| |||||||||||||||||| | | ||| | || ||||||| |||||||||||||||||  |||||||  |||||||| ||||||||||||||    
T  44719081 gtataatgtactaatagttgatatttttacctcattgtcctcacttattataaatcatttctctttttgcctaca--tatcatcaaatatctcaaattct 44718984  T
Q  133 ttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatttt 232  Q
    ||||| | ||||||||| ||||||||| | ||||| |||||| ||||||| || || |||||||| |||||||||||||||||||||||||||||| ||     
T  44718983 ttcttgataatatgaattttatcaagatttggatgtgaaatcgaatgaaaaataatcggttaaatgattgtttagttatttatatagagaaagatacttc 44718884  T
Q  233 cattgatattgaaaatgagaaaatcattctaagtttccataata 276  Q
     | ||||||||||||| |||||||||||  |||||| |||||||    
T  44718883 tactgatattgaaaataagaaaatcattgaaagttttcataata 44718840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 42530893 - 42531033
Alignment:
Q  100 ggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatat--------tatcaagaatcggatgcgaaatcaaatgaaagatgattgg 191  Q
    |||| |||| |||||||||||||||||||  ||||||| | |||||||||||        ||||||||||||||||||||||||||||| ||||||| ||    
T  42530893 ggcccacacttatcatcatatatctcaaaaactttcttgataatatgaatattatcatattatcaagaatcggatgcgaaatcaaatgagagatgatcgg 42530992  T
Q  192 ttaaatcattgtttagttatttatatagagaaagatatttt 232  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  42530993 ttaaatgattgtttagttatttatatagtgaaatatatttt 42531033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 42071626 - 42071527
Alignment:
Q  29 aatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||||| |||||||||||  ||||||||||||||  || ||||||||| ||||||||||||| | || | |||| |||||||||||||||||||    
T  42071626 aatagtataatgtactaatagttggcattttgatcacatgatccacacttatcacaaatcatttctctcttggtccacacctatcatcatatatctcaaa 42071527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 42071489 - 42071417
Alignment:
Q  204 ttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 276  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||  ||||||| ||||||    
T  42071489 ttagttatttatatagataaatatatttttattgatattgaaaatgagaaaatcatttaaagtttcgataata 42071417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 21490265 - 21490384
Alignment:
Q  182 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 281  Q
    |||||| ||||||||| |||||   |||| ||| |||||||   ||||||| ||||||||||||| |||||||||||||| | ||||| | |||| ||||    
T  21490265 agatgaatggttaaatgattgtc--gttacttagatagagatgtatatttttattgatattgaaattgagaaaatcattcaatgtttcaagaatatgaaa 21490362  T
Q  282 aatcataaaggacaattattat 303  Q
    |||| ||||  ||| |||||||    
T  21490363 aatcgtaaacaacacttattat 21490384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 7813549 - 7813624
Alignment:
Q  184 atgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 261  Q
    |||| ||||||||  |||||||||||| ||||||||||  |||||| ||  ||| |||| ||||||||||||||||||    
T  7813549 atgaatggttaaacaattgtttagttacttatatagag--agatatatttgttggtatttaaaatgagaaaatcattc 7813624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 947379 - 947492
Alignment:
Q  143 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 242  Q
    ||||||||||  ||||||| ||||| |||||   ||| ||||||| || |||| | ||| |||| ||| |||||| ||||  |||||||| ||||| ||     
T  947379 tatgaatatttacaagaattggatgtgaaattgcatggaagatgaatgattaattaattatttatttacttatattgagagtgatatttttattgacatc 947478  T
Q  243 gaaaatgagaaaat 256  Q
    ||||||||||||||    
T  947479 gaaaatgagaaaat 947492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 45 - 317
Target Start/End: Complemental strand, 6822790 - 6822518
Alignment:
Q  45 aatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaata 144  Q
    |||| |||| |||||||||||||   || || |||||| ||||||||| ||| | | || |||  |||||||||||||||||||||  ||| | | ||||    
T  6822790 aataattgacattttgatcacataatccacatttatcacaaatcatttttctcttgacccacatctatcatcatatatctcaaatttattcatgataata 6822691  T
Q  145 tgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattga 244  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||| |||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||    
T  6822690 tgaatattatcaagaatcggatgtgaaatcgaatgagagatgatcggttaaataattgtttagttatttatataaagaaagaaatttttattgatattga 6822591  T
Q  245 aaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaattttt 317  Q
    ||||||  ||||||||| |||||||||||||| |||||||  |||||||||||||||| ||||| ||||||||    
T  6822590 aaatgaacaaatcattcaaagtttccataatatgaaaaattgtaaaggacaattattaatgctacaaattttt 6822518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 11769760 - 11769903
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| | |||||||| | |||||||||| ||||||| ||||| ||| ||||||||||||||| |||  | | ||||||||||||||||||||||    
T  11769760 tagtataatgtattaatagttaacattttgatcatatggcccacacttctcacaaatcatttctcttttggctcaaatatatcatcatatatctcaaatt 11769859  T
Q  131 ctttcttaaaaatatgaatattatcaagaatcggatgcgaaatc 174  Q
     |||||| | ||||| ||||| ||||||||||||||||||||||    
T  11769860 ttttcttgataatataaatataatcaagaatcggatgcgaaatc 11769903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 254
Target Start/End: Original strand, 18250755 - 18250933
Alignment:
Q  77 ttatcataaatcatttctctttcggcctacacat-atcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatca 175  Q
    |||||| |||| |||||||| | || | |||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||  |||| |||||     
T  18250755 ttatcacaaattatttctctcttggtccacacattatcgtcatatatttcaaattctttcttgataatatgaatattatcaagaatcaaatgcaaaatcg 18250854  T
Q  176 aatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaa 254  Q
      ||| ||||||   | ||||| |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||    
T  18250855 cgtgagagatgaccagataaatgattgtttagttatttatatagagaaaaatatttttattaatattcaaaatgagaaa 18250933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 33106823 - 33106920
Alignment:
Q  199 attgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 298  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||| |||||||  ||||||| ||||||| ||||    
T  33106823 attgtttagttatttatatagagaaatatatttttattgatattgaaaatgag-aaatcattcaaaatttacataata-taaaaatcgtaaaggataatt 33106920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 33106707 - 33106823
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| |  ||||||||| ||||||| || |||   | ||||||||| |||| |||||||| | |||||||||||||  |||||||| |||||||    
T  33106707 tagtataatgtatcaatagttgacattttgaccatatgattcacacttatcacaaattatttctctcttggcctacacatatagtcatatatatcaaatt 33106806  T
Q  131 ctttcttaaaaatatga 147  Q
    ||||||| | |||||||    
T  33106807 ctttcttgataatatga 33106823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 298
Target Start/End: Original strand, 6901536 - 6901697
Alignment:
Q  143 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatata------gagaaagatattttcatt 236  Q
    |||||| |||||||||| || | ||||||||| |||| | ||| | ||||||||| ||||| |||||| |||||||      |||| ||| ||||| |||    
T  6901536 tatgaagattatcaagactcagctgcgaaatcgaatggatgatcaatggttaaatgattgtctagttacttatatatagagagagagagagatttttatt 6901635  T
Q  237 gatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 298  Q
    || |||||||||||||||||||||| |  |||||| |||| || || || || |||||||||    
T  6901636 gagattgaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 6901697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 100 - 308
Target Start/End: Complemental strand, 40381802 - 40381594
Alignment:
Q  100 ggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatca 199  Q
    |||| |||||||||||||||||||||||||| ||| || | ||||||||||||||||||||||| ||| |||||| ||||| ||||||| |||||||| |    
T  40381802 ggcccacacatatcatcatatatctcaaattattttttgataatatgaatattatcaagaatcgcatgtgaaatcgaatgagagatgatcggttaaatga 40381703  T
Q  200 ttgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatta 299  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||| ||||||  ||||||| || | ||||||||    
T  40381702 ttgtttagttatttatatagagaaatatatttttattgatattgaaaatgagaaaatctttcaaagtttctataatataaaaaatcgtagaagacaatta 40381603  T
Q  300 ttattgcta 308  Q
    ||| |||||    
T  40381602 ttaatgcta 40381594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 114 - 276
Target Start/End: Original strand, 42163974 - 42164136
Alignment:
Q  114 atcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttattt 213  Q
    |||||||||||| |||| |||||| | ||||||||||||||||||||||  ||  |||||| ||||| |||| || |||||||| |||||||||||||||    
T  42163974 atcatatatctctaattatttcttgataatatgaatattatcaagaatcaaataggaaatcgaatgagagataatcggttaaatgattgtttagttattt 42164073  T
Q  214 atatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataata 276  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||| || |||||||||||    
T  42164074 atatagagaaggatatttttattgatattaaaaatgagaaaatcattcaaaatttccataata 42164136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 14539388 - 14539589
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| ||  ||| |||| ||||| || |||||| || |||||| || ||||||||||||| | |||| |||| ||| ||||||||||||||||     
T  14539388 tagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaatc 14539487  T
Q  131 ctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatt 230  Q
    ||||||| | | ||||||||||||||| |||| ||||||||||| | ||  ||||||  |||||||| |||||||||||||||||||||| ||| |||||    
T  14539488 ctttcttgatagtatgaatattatcaaaaatcagatgcgaaatcgagtgggagatgaccggttaaatgattgtttagttatttatatagaaaaaaatatt 14539587  T
Q  231 tt 232  Q
    ||    
T  14539588 tt 14539589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 105 - 320
Target Start/End: Original strand, 37728356 - 37728571
Alignment:
Q  105 acacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtt 204  Q
    |||| ||||||||||||| | ||||  ||| || |  |||||||||| |||||||||  ||||| ||||| | ||  |||||  ||||||||| || |||    
T  37728356 acacctatcatcatatattttaaatcattttttgatgatatgaatatgatcaagaattagatgcaaaatcgagtgtgagatggctggttaaatgatcgtt 37728455  T
Q  205 tagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattatt 304  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||| || |||||||  || | ||||||||| || |||||||||| |    
T  37728456 tagttatttatatagagaatgatatttttattgatattgaaaattagaaaattattcaaattttccatggtacggaaaatcatagagaacaattattaat 37728555  T
Q  305 gctataaatttttata 320  Q
    |||| |||||||||||    
T  37728556 gctacaaatttttata 37728571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 72 - 316
Target Start/End: Complemental strand, 3310775 - 3310531
Alignment:
Q  72 cccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattcttt-cttaaaaatatgaatattatcaagaatcggatgcga 170  Q
    ||||||||||  |||| |||||||||| |||  ||   ||||||||||||||||||||| ||| ||| | | ||||||||||||||||||||||||| ||    
T  3310775 cccacttatccgaaattatttctcttttggctcacgtttatcatcatatatctcaaatttttttcttcatagtatgaatattatcaagaatcggatgaga 3310676  T
Q  171 aatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttcc 270  Q
    | || ||||| |||||   ||||||||  ||||||| |||||| ||||| |||| ||||||| | ||||||||||||||| || || |  | ||||||||    
T  3310675 attcgaatgagagatgtccggttaaatgtttgtttaattatttgtatagtgaaatatatttttaatgatattgaaaatgataagat-aaccaaagtttcc 3310577  T
Q  271 ataataggaaaaatcataaaggacaattattattgctataaatttt 316  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||    
T  3310576 ataatatgaaaaatagtagaggacaattattaatgctacaaatttt 3310531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 2537272 - 2537200
Alignment:
Q  189 tggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 261  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||  ||| |||||||||||||||||||||||    
T  2537272 tggttaaattattgtttagttacttatatagagagagatatttttgttggtattgaaaatgagaaaatcattc 2537200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 298
Target Start/End: Complemental strand, 12585810 - 12585655
Alignment:
Q  143 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 242  Q
    |||||| |||||||||| || | ||||||||  ||||   ||| | ||||||||| ||||| |||||| ||||||||||| ||| ||||| ||||| |||    
T  12585810 tatgaagattatcaagactcagttgcgaaattgaatgggtgatcaatggttaaatgattgtctagttacttatatagagagagagatttttattgagatt 12585711  T
Q  243 gaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 298  Q
    ||||||||||||||||||| |  |||||| |||| || || || || |||||||||    
T  12585710 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 12585655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 1336363 - 1336280
Alignment:
Q  45 aatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    ||||||||| ||||||||||||||  || ||||||||| ||| ||||||||| | |||| |||| |||||||||||||||||||    
T  1336363 aatagttgacattttgatcacatgaaccacacttatcacaaaacatttctctcttggcccacacttatcatcatatatctcaaa 1336280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 16340319 - 16340198
Alignment:
Q  194 aaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaagga 293  Q
    |||| |||||||||||||||||| ||||| |  | |||| ||||||||||||||| ||||||||||||  ||||||| ||||| ||| |||  || | ||    
T  16340319 aaatgattgtttagttatttatacagagata--tttttttattgatattgaaaataagaaaatcattcacagtttccgtaatatgaataattgtagaaga 16340222  T
Q  294 caattattattgctataaattttt 317  Q
    | ||||||| ||||| || |||||    
T  16340221 ctattattaatgctacaatttttt 16340198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 1336201 - 1336146
Alignment:
Q  265 gtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    |||||||||||| ||| ||||||| |||||||||| || ||||| |||||||||||    
T  1336201 gtttccataatatgaataatcatagaggacaattactaatgctacaaatttttata 1336146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 15356060 - 15356162
Alignment:
Q  154 tcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaa 253  Q
    ||||||||| ||||| |||||  |||  |||||| || |||||  |||||||||||| ||||||||||| | | | |||| ||| |||||| ||||||||    
T  15356060 tcaagaatcagatgcaaaatcgtatgggagatgaatgattaaacaattgtttagttacttatatagagagatacactttcgttggtattgataatgagaa 15356159  T
Q  254 aat 256  Q
    |||    
T  15356160 aat 15356162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 40381863 - 40381827
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacat 67  Q
    |||||||||| || |||||||||||||||||||||||    
T  40381863 tagtataatgtaccaatagttgatattttgatcacat 40381827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 31 - 317
Target Start/End: Complemental strand, 15727146 - 15726860
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| |  ||||||||| |||||||||| | |  || || |||||| |||| |||| | ||| |||| ||| |||| |||||||||||||||||    
T  15727146 tagtataatgtatcaatagttgacattttgatcatacgatccacatttatcacaaattatttgtattttggcccacatatataatcatatatctcaaatt 15727047  T
Q  131 ctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatt 230  Q
     |||||| | | |||||||||||||||||||| ||||| ||||  ||||| ||||||| |||||||| |||||||||||||||||||| ||||| |||||    
T  15727046 atttcttgatagtatgaatattatcaagaatctgatgcaaaattgaatgagagatgatcggttaaatgattgtttagttatttatataaagaaatatatt 15726947  T
Q  231 ttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaattttt 317  Q
    || |||||| || ||||| |||||| ||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||| ||||||||    
T  15726946 tttattgattttcaaaataagaaaaccattcaaagtttccataatatgaaaaattatagaggacaattattaatgctacaaattttt 15726860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 31 - 317
Target Start/End: Complemental strand, 15810991 - 15810705
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| |  ||||||| | ||||||| |||| || |  ||||||||| |||| |||| ||||| |||| ||| ||||||||||||||||||||||    
T  15810991 tagtataatgtatcaatagttcacattttgaccacacggtctacacttatcacaaattatttttcttttggcccacatatatcatcatatatctcaaatt 15810892  T
Q  131 ctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatt 230  Q
     ||| || | | ||||||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  15810891 attttttgatagtatgaatattatcaagaattggatgcaaaatcgaatgagagatgatcggttaaatgattgtttagttatttatatagagaaatatatt 15810792  T
Q  231 ttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaattttt 317  Q
    || |||||| || ||||| |||||| | ||| |||||||| ||||| |||||||  || ||||||||||||| ||||| ||||||||    
T  15810791 tttattgattttcaaaataagaaaaccgttcaaagtttccgtaatatgaaaaattgtagaggacaattattaatgctacaaattttt 15810705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 320
Target Start/End: Complemental strand, 29368713 - 29368477
Alignment:
Q  84 aaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaag 183  Q
    ||||||||||||| | |||  ||| |||||||||||||||||||||||||| || | |||||||||||||||||||| ||||| |  |||| ||||  ||    
T  29368713 aaatcatttctctcttggctcacatatatcatcatatatctcaaattctttattgataatatgaatattatcaagaaccggatacataatcgaatgtgag 29368614  T
Q  184 atgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaa 283  Q
    ||||| |||||||| ||||||   ||||||||||| ||||| ||| ||| |||||||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  29368613 atgatcggttaaatgattgttcgattatttatataaagaaatatacttttattgatattgaaaatgagaaaaccattcaaagtttcaataatatgaaaaa 29368514  T
Q  284 tcataaaggacaattattattgctataaatttttata 320  Q
    |  || ||||||||||||| ||||| |||||||||||    
T  29368513 ttctagaggacaattattaatgctacaaatttttata 29368477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 247
Target Start/End: Complemental strand, 4930861 - 4930660
Alignment:
Q  45 aatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaata 144  Q
    ||||||||| ||||||| |||||| ||  ||||| ||| ||||||||||| | | || | |||||||||| ||| ||||||||||||||| || | ||||    
T  4930861 aatagttgagattttgaccacatgacctacacttctcacaaatcatttctttcttggtccacacatatca-catgtatctcaaattcttttttgataata 4930763  T
Q  145 tgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattga 244  Q
    ||||||||||||||||||||||| ||| || |||| ||||||||  ||||||| ||| |||||||||||||||| ||||| ||||||| |||||||||||    
T  4930762 tgaatattatcaagaatcggatgtgaagtcgaatggaagatgatcagttaaatgattatttagttatttatataaagaaatatatttttattgatattga 4930663  T
Q  245 aaa 247  Q
    |||    
T  4930662 aaa 4930660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 22399404 - 22399520
Alignment:
Q  203 tttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattatta 302  Q
    ||||||||||||||| ||||||  | |||  |||||||||||||||||||||||||||  |||||||||||||| ||| |||  || |||||||||| ||    
T  22399404 tttagttatttatat-gagaaatgtttttctattgatattgaaaatgagaaaatcatttaaagtttccataatatgaataattctataggacaattacta 22399502  T
Q  303 ttgctataaatttttata 320  Q
     ||||| |||||||||||    
T  22399503 atgctacaaatttttata 22399520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 17229004 - 17229054
Alignment:
Q  207 gttatttatatagagaaagatattttcattgatattgaaaatgagaaaatc 257  Q
    |||||||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  17229004 gttatttacatagagaaaaatatttttattgattttgaaaatgagaaaatc 17229054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 38351768 - 38351726
Alignment:
Q  119 atatctcaaattctttcttaaaaatatgaatattatcaagaat 161  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  38351768 atatctcaaattctttcttgataatatgaatattatcaagaat 38351726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 17228914 - 17228975
Alignment:
Q  100 ggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaat 161  Q
    |||| ||| ||||||||||||| |||||||||||| || | |||||||||||| ||||||||    
T  17228914 ggcccacatatatcatcatatagctcaaattcttttttgataatatgaatattgtcaagaat 17228975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 27343174 - 27343218
Alignment:
Q  224 agatattttcattgatattgaaaatgagaaaatcattctaagttt 268  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||    
T  27343174 agatatttttattgacattgaaaatgagaaaatcattcaaagttt 27343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 40910037 - 40909995
Alignment:
Q  234 attgatattgaaaatgagaaaatcattctaagtttccataata 276  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||    
T  40910037 attgatattgaaaatgagaagatcattcaaagtttctataata 40909995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 82 - 312
Target Start/End: Complemental strand, 30294321 - 30294091
Alignment:
Q  82 ataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaa 181  Q
    |||||| |||||||||| |  |||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||| ||||||||||| |||||     
T  30294321 ataaattatttctcttttgatctacacatatcatcatatatcttaaattctttcttgatagtatgaatattatcaagaatctgatgcgaaatcgaatgag 30294222  T
Q  182 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 281  Q
    ||||||| |||||||  |||||||||||||||||||| | ||||||||||| |||||| || ||||| |||||| ||||| |||||||||||||| ||||    
T  30294221 agatgatcggttaaaagattgtttagttatttatataaaaaaagatatttttattgattttcaaaataagaaaaccattcaaagtttccataatatgaaa 30294122  T
Q  282 aatcataaaggacaattattattgctataaa 312  Q
    |||  || | ||||||||||| || ||||||    
T  30294121 aattgtagaagacaattattaatgttataaa 30294091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 45 - 316
Target Start/End: Complemental strand, 27850707 - 27850435
Alignment:
Q  45 aatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattcttt-cttaaaaat 143  Q
    ||||||| ||||||||| ||||||  || |||||||||||||| |||||||||| |||| |||| |||||| |||||| ||||||| ||| ||| | |||    
T  27850707 aatagtttatattttgaccacatgtaccacacttatcataaattatttctcttttggcccacacttatcattatatatatcaaatttttttcttgataat 27850608  T
Q  144 atgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattg 243  Q
    |||||||||||||||||| |||||| ||| | |||  || |||||  ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||||    
T  27850607 atgaatattatcaagaattggatgcaaaagcgaatataatatgatcagttaaatgattgtttagttatttatatagtgaaagacatttttattaatattg 27850508  T
Q  244 aaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttt 316  Q
    ||||||| || ||||||| |||||||||||| | ||||||| ||| |||| |||||||| | ||| |||||||    
T  27850507 aaaatgataatatcattcaaagtttccataaaatgaaaaattatagaggagaattattaatactacaaatttt 27850435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 21487306 - 21487530
Alignment:
Q  35 ataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattcttt 134  Q
    ||||||||| || |||||||||||||| ||||||| || ||||| ||| ||||||||||||||| || | ||||||||||||| ||||||||||||||||    
T  21487306 ataatgcaccaa-agttgatattttgaccacatggtccacacttctcacaaatcatttctcttttggtccacacatatcatca-atatctcaaattcttt 21487403  T
Q  135 cttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatttt-- 232  Q
     || | ||||||||||||||     ||| ||||  ||||||||||| |||||||  ||||||| |||||||| ||||||||||||| ||| |||||||      
T  21487404 tttgataatatgaatattat-----atcagatgtaaaatcaaatgagagatgatcagttaaatgattgtttaattatttatatagataaaaatatttttt 21487498  T
Q  233 -----cattgatattgaaaatgagaaaatcat 259  Q
          ||||||||||||||||||||||||||    
T  21487499 attgatattgatattgaaaatgagaaaatcat 21487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 37245022 - 37244915
Alignment:
Q  182 agatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattctaagtttccataataggaaa 281  Q
    |||||||| ||||||| |||||||| |||||||||| |||||  ||||||| |||||||| ||||||| ||||||||||| |||||| ||||| | ||||    
T  37245022 agatgattcgttaaatgattgtttaattatttatattgagaacaatatttttattgatatcgaaaatgtgaaaatcattcaaagttttcataaaatgaaa 37244923  T
Q  282 aatcataa 289  Q
    ||||||||    
T  37244922 aatcataa 37244915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 46396444 - 46396541
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||| |  ||||||||| |||||||||||||||  | ||||||||| ||||||||||||| | |||| |||| |||||||||||||||||||    
T  46396444 tagtataatgtatcaatagttgacattttgatcacatggatcacacttatcagaaatcatttctctcttggcccacacttatcatcatatatctcaaa 46396541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 5200404 - 5200333
Alignment:
Q  147 aatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatata 218  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  5200404 aatattatcaagaatcaaatgtgaaatcaaatgagagatgattgattaaataattgtttagttatttatata 5200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 42773473 - 42773370
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| || ||||||||||||||||| ||||| |||  | ||| | | ||||||||||||||| |||  ||||||||||||||||| ||||||||    
T  42773473 tagtataatgtaccaatagttgatattttgaccacatagcctactcttcttacaaatcatttctcttttggcacacacatatcatcatataactcaaatt 42773374  T
Q  131 cttt 134  Q
    ||||    
T  42773373 cttt 42773370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 29095842 - 29095902
Alignment:
Q  201 tgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 261  Q
    |||||||||| ||| |||||||||||| |||| ||||| ||||||||||||||||||||||    
T  29095842 tgtttagttacttacatagagaaagatgtttttattgagattgaaaatgagaaaatcattc 29095902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 37245128 - 37245038
Alignment:
Q  45 aatagttgatattttgatcacatggcccccacttatcataaatcatttctct-ttcggcctacacatatcatcatatatctcaaattcttt 134  Q
    |||| |||| ||||||||||||||  || ||||||||||||||||||||||| || | || ||| |||| |||||||||||||||| ||||    
T  37245128 aatatttgacattttgatcacatgatccacacttatcataaatcatttctctcttagccccacatatataatcatatatctcaaatacttt 37245038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 42772377 - 42772340
Alignment:
Q  194 aaatcattgtttagttatttatatagagaaagatattt 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42772377 aaatgattgtttagttatttatatagagaaagatattt 42772340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 42772459 - 42772392
Alignment:
Q  142 atatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagtt 209  Q
    ||||||||||||||||||||||||  || |||| ||||| |||||||   |||||| |||||||||||    
T  42772459 atatgaatattatcaagaatcggacacggaatcgaatgagagatgatcaattaaatgattgtttagtt 42772392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 46396620 - 46396682
Alignment:
Q  258 attctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    |||| ||||||| |||||| ||| |||| || ||||||||||||| ||||| |||||||||||    
T  46396620 attcaaagtttcaataatatgaataatcgtagaggacaattattaatgctacaaatttttata 46396682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 1282354 - 1282281
Alignment:
Q  149 tattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagaga 222  Q
    |||||| ||||||  ||||||||||||| |    ||||| ||||||||| ||||||||||||||| ||||||||    
T  1282354 tattattaagaattagatgcgaaatcaagtaggggatgactggttaaatgattgtttagttatttttatagaga 1282281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 1282452 - 1282356
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||| | |||||||||| |||| |||||||||   | ||||||||| ||||||||||| | | |||| |||| | || ||||||||||||||    
T  1282452 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 1282356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 1283385 - 1283312
Alignment:
Q  149 tattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagaga 222  Q
    |||||| ||||||  ||||||||||||| |    ||||| ||||||||| ||||||||||||||| ||||||||    
T  1283385 tattattaagaattagatgcgaaatcaagtaggggatgactggttaaatgattgtttagttatttttatagaga 1283312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 1283483 - 1283387
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||| | |||||||||| |||| |||||||||   | ||||||||| ||||||||||| | | |||| |||| | || ||||||||||||||    
T  1283483 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 1283387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 31570500 - 31570581
Alignment:
Q  180 aaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcattc 261  Q
    |||||| | ||||||||  ||| |||||||||||||||||||| | |||||||  ||| |||| ||||||| | ||||||||    
T  31570500 aaagataaatggttaaaaaattatttagttatttatatagagagaaatatttttgttgttattaaaaatgaaataatcattc 31570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 31 - 320
Target Start/End: Original strand, 23756472 - 23756763
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| || ||  ||||| |||||||| | ||||||| ||||||  | ||||||||||||||| |||   ||| |||||||||||||||||||||    
T  23756472 tagtataatgtaccaaccgttgacattttgatgagatggcccacacttaatacaaatcatttctcttttggcacgcacctatcatcatatatctcaaatt 23756571  T
Q  131 ctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatt 230  Q
    ||||||| | |||| ||||||||||||||||| ||||||||||  | ||  |||| | ||||||| | || |||||||| |||||||||| ||| |||||    
T  23756572 ctttcttgataatacgaatattatcaagaatcagatgcgaaatttagtgggagattactggttaagtgatcgtttagttgtttatatagaaaaatatatt 23756671  T
Q  231 ttcattgata-ttgaaaatgagaaaatcattctaagtttccataataggaaaaatc-ataaaggacaattattattgctataaatttttata 320  Q
    || ||||||| ||||||||||||||||||||| ||||||||||||||  ||||||| || |  ||||||||||| ||||| || ||||||||    
T  23756672 tttattgatatttgaaaatgagaaaatcattcaaagtttccataatataaaaaatcaattagagacaattattaatgctacaactttttata 23756763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 298
Target Start/End: Original strand, 22972847 - 22973002
Alignment:
Q  143 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 242  Q
    |||||| |||||||||| || | ||||||||| ||||   ||| | ||||||||| ||||| |||||| ||||||| ||| ||| ||||| ||||| |||    
T  22972847 tatgaagattatcaagactcagttgcgaaatcgaatgggtgatcaatggttaaatgattgtctagttacttatatatagagagagatttttattgagatt 22972946  T
Q  243 gaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaatt 298  Q
    ||||||||||||||||||| |  |||||| |||| || || || || |||||||||    
T  22972947 gaaaatgagaaaatcattcgatatttccaaaatatgacaagtcgtagaggacaatt 22973002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 33758395 - 33758512
Alignment:
Q  144 atgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattg 243  Q
    |||| ||||||||||||||||||| |||||   ||||| ||| | || |||||| |||||||  ||| |||||| ||||| |||||||| ||||| ||||    
T  33758395 atgagtattatcaagaatcggatgtgaaattggatgaaggataaatgattaaataattgtttgattacttatattgagaatgatatttttattgacattg 33758494  T
Q  244 aaaatgagaaaatcattc 261  Q
    ||||||||||||| ||||    
T  33758495 aaaatgagaaaattattc 33758512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 33338293 - 33338348
Alignment:
Q  199 attgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaat 256  Q
    |||||||| |||||||||||||  ||  |||||| |||||||||||||||||||||||    
T  33338293 attgtttaattatttatatagaataa--tatttttattgatattgaaaatgagaaaat 33338348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 46232378 - 46232432
Alignment:
Q  42 actaatagttgatattttgatcacatggcccccacttatcataaatcatttctct 96  Q
    |||||||||||| |||||||  ||||| ||| ||||||||| |||||||||||||    
T  46232378 actaatagttgacattttgactacatgacccacacttatcacaaatcatttctct 46232432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 13035747 - 13035532
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaatt 130  Q
    |||||||||| |  ||||||||| ||||||| |||| | ||| ||||||||| ||||||||| ||| | |||| |||| ||| ||||||||| | ||||     
T  13035747 tagtataatgtaggaatagttgacattttgaccacaagacccacacttatcacaaatcatttatctcttggcccacacctataatcatatatatgaaatc 13035648  T
Q  131 ctttcttaaaaatatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatatt 230  Q
    ||||||| | |||||||||||||||||||||||||||  ||||| | ||  ||||||  |||||||| |||||    ||||||||||||||||| |||||    
T  13035647 ctttcttgataatatgaatattatcaagaatcggatgtcaaatcgagtgggagatgaccggttaaataattgt----ttatttatatagagaaaaatatt 13035552  T
Q  231 ttcattgatattgaaaatga 250  Q
    || |||||||| ||||||||    
T  13035551 tttattgatatcgaaaatga 13035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 320
Target Start/End: Original strand, 22087635 - 22087913
Alignment:
Q  45 aatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaattctttcttaaaaata 144  Q
    ||||||||| ||||||| |||||| ||| ||||||||| | ||||||||||||| |||  |||| ||| || ||||||||||| |  |||||| | ||||    
T  22087635 aatagttgacattttgaccacatgacccacacttatcacatatcatttctcttttggctcacacctataattatatatctcaagtcatttcttgataata 22087734  T
Q  145 tgaatattatcaagaatcggatgcgaa-----atcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgat 239  Q
    ||||||||||||||||| | |||| ||     ||  | ||  |||| || |||||||| | |||||| ||| | || || | ||| ||||||| ||||||    
T  22087735 tgaatattatcaagaatagaatgcaaatcgatattgagtgggagataatcggttaaatgactgtttaattaat-atttatataaa-atatttttattgat 22087832  T
Q  240 attgaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    |||||||||| ||||||||||| |||||| ||||||| ||||||||||| |||| ||||||||||| || |||||||||||    
T  22087833 attgaaaatgcgaaaatcattcaaagttttcataatatgaaaaatcatagaggataattattattgttacaaatttttata 22087913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 320
Target Start/End: Original strand, 47551993 - 47552166
Alignment:
Q  149 tattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatat--tttcattgatattgaaa 246  Q
    |||||| || ||| |||| ||||||||| |   |||||| || |||||| |||||||||||||| ||| |||||||  | |  ||| |||||||||||||    
T  47551993 tattatgaaaaattggatacgaaatcaagtcggagatgactgattaaatgattgtttagttattcatacagagaaaagtttctttttattgatattgaaa 47552092  T
Q  247 atgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    ||||||||||||||| |||||||||||||| ||| |||| ||||||| ||||| || || || |||||||||||    
T  47552093 atgagaaaatcattcaaagtttccataatatgaataatcgtaaaggataattactaatgttacaaatttttata 47552166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 46732755 - 46732653
Alignment:
Q  158 gaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatc 257  Q
    ||||| ||||||||||||||||  |||||| ||||||| | |||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| |    
T  46732755 gaatcagatgcgaaatcaaatgggagatgactggttaattgattgtttaattatttatatagaaagagatatttt-attgatattgaaaatgagaaaaac 46732657  T
Q  258 attc 261  Q
    ||||    
T  46732656 attc 46732653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 27907367 - 27907223
Alignment:
Q  154 tcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaa 253  Q
    |||||||||||||||||||||  ||   |||||| ||||||||  |||||||||||| ||||||||||  |||||||||  ||| |||||||||||| ||    
T  27907367 tcaagaatcggatgcgaaatcgcataggagatgaatggttaaacaattgtttagttacttatatagag--agatatttttgttggtattgaaaatgaaaa 27907270  T
Q  254 aatcattctaagtttccataataggaaaaatcataaaggacaattat 300  Q
    |||||||| |  ||| || |||| | | |||| ||||||||||||||    
T  27907269 aatcattcaatattttcaaaatatggagaatcgtaaaggacaattat 27907223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 35747072 - 35747008
Alignment:
Q  110 tatcatcatatatctcaaattctttcttaaaaatatgaatattatcaagaatcggatgcgaaatc 174  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||| ||| |||||| |||||    
T  35747072 tatcatcatatatctcaaatcctttcttgataatatgaatattatcaaaaattggatgcaaaatc 35747008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 47551897 - 47551991
Alignment:
Q  34 tataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    ||||||| |||||||||||| ||||| ||||||||  || ||||||||| ||||||||||| | | ||||  ||| |||||||| ||||||||||    
T  47551897 tataatgtactaatagttgacattttaatcacatgaaccacacttatcacaaatcatttctttcttggcccgcacttatcatcaaatatctcaaa 47551991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 24368009 - 24368092
Alignment:
Q  177 atgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatattgaaaatgagaaaatcatt 260  Q
    ||||||||||| || |||| | ||| |||| ||| |||||| ||||  |||||||| ||||| |||||||||||||||||||||    
T  24368009 atgaaagatgaatgattaattaattatttatttacttatattgagagtgatatttttattgacattgaaaatgagaaaatcatt 24368092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 26333241 - 26333303
Alignment:
Q  258 attctaagtttccataataggaaaaatcataaaggacaattattattgctataaatttttata 320  Q
    |||| |||||||||||||| ||| |||| || ||||||||||||| ||||| |||||||||||    
T  26333241 attcaaagtttccataatatgaataatcgtagaggacaattattaatgctacaaatttttata 26333303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 317
Target Start/End: Complemental strand, 13028815 - 13028646
Alignment:
Q  143 tatgaatattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagagaaagatattttcattgatatt 242  Q
    ||||||||||||||||||||||||  |||||| | ||  ||||||   ||||||| |||||    |||| |||||||||| | |||| || ||| || |     
T  13028815 tatgaatattatcaagaatcggatatgaaatcgactggtagatgaccagttaaataattgt----ttatatatatagagataaatatatttattaatttc 13028720  T
Q  243 gaaaatgagaaaatcattctaagtttccataataggaaaaatcataaaggacaattattattgctataaattttt 317  Q
    |||||||||||||| |||| || ||| |||||||  ||||| | || |||| |||||||| |||| |||||||||    
T  13028719 gaaaatgagaaaatgattcaaaattttcataatattaaaaaacgtagaggataattattaatgct-taaattttt 13028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 13029076 - 13028978
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaat 129  Q
    |||||||||| || ||||||||| ||||||| ||||||  || ||||||||| ||||||||| ||| | || | |||  ||| ||||||||||| ||||    
T  13029076 tagtataatgtacgaatagttgacattttgaccacatgatccacacttatcacaaatcatttatctcttggtccacatctataatcatatatctgaaat 13028978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 6495746 - 6495814
Alignment:
Q  193 taaatcattgtttagttatttatata--gagaaagatattttcattgatattgaaaatgagaaaatcat 259  Q
    ||||| |||||||||||| |||||||  |||| ||||||||| ||||| | | ||||||||||||||||    
T  6495746 taaatgattgtttagttacttatatatagagagagatatttttattgagactaaaaatgagaaaatcat 6495814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 8034 - 7961
Alignment:
Q  149 tattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagaga 222  Q
    |||||| ||||||  ||||||||||||| |    ||||| ||||||||| ||||||||||||||| ||||||||    
T  8034 tattattaagaattagatgcgaaatcaagtaggggatgactggttaaatgattgtttagttatttttatagaga 7961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 8132 - 8036
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||| | |||||||||| |||| |||||||||   | ||||||||| ||||||||||| | | |||| |||| | || ||||||||||||||    
T  8132 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 8036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 8362 - 8289
Alignment:
Q  149 tattatcaagaatcggatgcgaaatcaaatgaaagatgattggttaaatcattgtttagttatttatatagaga 222  Q
    |||||| ||||||  ||||||||||||| |    ||||| ||||||||| ||||||||||||||| ||||||||    
T  8362 tattattaagaattagatgcgaaatcaagtaggggatgactggttaaatgattgtttagttatttttatagaga 8289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 8460 - 8364
Alignment:
Q  31 tagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctctttcggcctacacatatcatcatatatctcaaa 128  Q
    |||||||||| | |||||||||| |||| |||||||||   | ||||||||| ||||||||||| | | |||| |||| | || ||||||||||||||    
T  8460 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaa 8364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University