View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_37 (Length: 344)
Name: NF10466_low_37
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 5159701 - 5159391
Alignment:
| Q |
16 |
aacttatttcattgtttttgttaattatttaaaatgtaaaatcaataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5159701 |
aacttatttcattgtttttgttaattatttaaaatttaaaatcaataaaaaagttatcttcattgtaacaatccatccc------------gtgaagcag |
5159614 |
T |
|
| Q |
116 |
ttatgaattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159613 |
ttatgaattaattatttgtgtttggtagtattcataccttcaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgtt |
5159514 |
T |
|
| Q |
216 |
gaacatctgcag-nnnnnnnngagagtacatagttagagatataattttcaataaataaatctgtaagaactattcccc-nnnnnnntttacaaattatg |
313 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5159513 |
gaacatctgcagaaaaaaaaagagagtacatagttagagatataa-tttcaataaataaatctgtaagaactattccccaaaaaaaatttacaaattatg |
5159415 |
T |
|
| Q |
314 |
tttgactatttaaaaaatttcaag |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5159414 |
tttgactatttaaaaaatttcaag |
5159391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 5195346 - 5195065
Alignment:
| Q |
16 |
aacttatttcattgtttttgttaattatttaaaatgtaaaatcaataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcag |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5195346 |
aacttatttcgttgtttttgttaattatttaaaatttaaaataaaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaa |
5195247 |
T |
|
| Q |
116 |
ttatgaattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5195246 |
ttatgaattaattatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgtt |
5195147 |
T |
|
| Q |
216 |
gaacatctgcag----nnnnnnnngagagtacatagttagagatataattttcaataaataaatctgtaagaactattcccc |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5195146 |
gaacatctgcagaagaaaaaaaaagagagtacatagttagagatataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 5181948 - 5181710
Alignment:
| Q |
16 |
aacttatttcattgtttttgttaattatttaaaatgtaaaatcaataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcag |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5181948 |
aacttatttcattctttttgttaattatttaaaatttaaaatcaatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaa |
5181849 |
T |
|
| Q |
116 |
ttatgaattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5181848 |
ttatgaattaattatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgtt |
5181749 |
T |
|
| Q |
216 |
gaacatctgcagnnnnnnnngagagtacatagttagaga |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
5181748 |
gaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 5172594 - 5172489
Alignment:
| Q |
121 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca |
220 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
5172594 |
aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaaca |
5172495 |
T |
|
| Q |
221 |
tctgca |
226 |
Q |
| |
|
|||||| |
|
|
| T |
5172494 |
tctgca |
5172489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 4843028 - 4843133
Alignment:
| Q |
121 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaaca |
220 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4843028 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaaca |
4843127 |
T |
|
| Q |
221 |
tctgca |
226 |
Q |
| |
|
|||||| |
|
|
| T |
4843128 |
tctgca |
4843133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 5212815 - 5212716
Alignment:
| Q |
126 |
attatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc |
225 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||||||||||||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
5212815 |
attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
237 |
agagtacatagttagagatataattttcaataaat |
271 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University