View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_39 (Length: 337)
Name: NF10466_low_39
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 29715323 - 29715642
Alignment:
| Q |
1 |
taaaaagaaaacaaatactcaatttggtcctttgcatgctctcatatgactagtatatatgactaaaatttgatagagtcgaaaaacttttttaaaatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29715323 |
taaaaagaaaacaaatactcaatttggtcctttgcatgctctcctatgactagtatatatgactaaaatttgatagagtcgaaaaacttttttaaaatac |
29715422 |
T |
|
| Q |
101 |
caatgaaacattagtcctactttttctattataagtcgttttacaactttgacatgattaagatgttttatcgtatatggatgatatgtaatctagtaag |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29715423 |
caatgaaacattagtcctacttttcctattataagtcgttttacaactttgacatgattaagatgttttatcgtatatggatgatatgtaatctagtaag |
29715522 |
T |
|
| Q |
201 |
ctaatttacataaaggaaatgaactcctttacatggtgaataaatctattatttatagnnnnnnngaataaacaaacttaagctttgcatacatgatata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29715523 |
ctaatttacataaaggaaatgaactcctttacatggtgaataaatctattatttatagaaaaaaagaataaacaaacttaagctttgcatacatgatata |
29715622 |
T |
|
| Q |
301 |
tgttttcttaactacctaaa |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
29715623 |
tgttttcttaactacctaaa |
29715642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 28024625 - 28024669
Alignment:
| Q |
90 |
ttttaaaataccaatgaaacattagtcctactttttctattataa |
134 |
Q |
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|||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
28024625 |
ttttaaaataccaatgcaacattaatgatactttttctattataa |
28024669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 32267747 - 32267703
Alignment:
| Q |
90 |
ttttaaaataccaatgaaacattagtcctactttttctattataa |
134 |
Q |
| |
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|||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
32267747 |
ttttaaaataccaatgcaacattaatgttactttttctattataa |
32267703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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