View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_4 (Length: 738)
Name: NF10466_low_4
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Original strand, 41754992 - 41755511
Alignment:
| Q |
19 |
tatgtcacatgatttcgaaacaataaaaatgaataaaccaaagacatttaattgaattattgtgatgttggctatgaatatatgcgttaatacctgataa |
118 |
Q |
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| T |
41754992 |
tatgtcacatgatttcgaaacaataaaaatgaataaaccaaagacatttaattgaattattatgatgttggctatgaatatatgcgttaatacctgataa |
41755091 |
T |
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| Q |
119 |
aatgaaaaggagaaaaagcaaagggagaagcatgattatgagttgctttgccattgatgaacataaacaatttggtgatgtgaaagtgtatcattctctt |
218 |
Q |
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| T |
41755092 |
aatgaaaaggagaaaaagcaaagggagaagcatgattatgagttgctttgccattgatgaacataaacaatttggtgatgtgaaagtgtatcattctctc |
41755191 |
T |
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| Q |
219 |
ctatcctatttatttataagcac--atggttgatgtaggttgctatagatagaaaggtcacagagttgaccagaaatgggtcaataatgattaagtaatt |
316 |
Q |
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| T |
41755192 |
ctatcc----tatttataagcacaaatggttgatgtaggttactatagatagaaaggtcacagagttgaccagaaatgggtcaataatgattaagtaatt |
41755287 |
T |
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| Q |
317 |
tctattgtgaaatttttgtattgactatcaataaatattgacagccccatctctttaatattaatatataaaataaatcatttatacgtcctaattattc |
416 |
Q |
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| T |
41755288 |
tctattgtgaaatttttgtattgactatcaataaatattgacagccccatctct------ttaatatataaaataaatcatttatacgtcctatttattg |
41755381 |
T |
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| Q |
417 |
gttgattcaaaagtacaaatgtcctatttattggtccatatgaaattatgaatatggaataatgaaatgatttaatactatacgaagaaagtactatcaa |
516 |
Q |
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| T |
41755382 |
gtttattcaaaagtacaaatgtcctatttattggtccatatgaaattatgaatatggaataatgaaatgatttaatactatacgaagaaagtagtatcaa |
41755481 |
T |
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| Q |
517 |
taacgcttgttaagaaaatcaattatcctt |
546 |
Q |
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| T |
41755482 |
taacgcttgttaagaaaatcaattatcctt |
41755511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 564 - 704
Target Start/End: Original strand, 41755493 - 41755632
Alignment:
| Q |
564 |
aagaaaatcaattatccttataccgtatttaatatttttaacatttaccaaattatttatgggctgaattagtcagccgatgtcggatgagttttgtcaa |
663 |
Q |
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| T |
41755493 |
aagaaaatcaattatccttataccgtatttaatatttt-aacatttaccaaattatttatgggctgaattagtcagccgatgtcggatgagttttgtcaa |
41755591 |
T |
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| Q |
664 |
ttgtgctgtccttttgcggtaccaaaatcttcaacggtacc |
704 |
Q |
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| T |
41755592 |
ttgtgctatccttttgcggtaccaaaatcttcaacggtacc |
41755632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 41760945 - 41761069
Alignment:
| Q |
47 |
atgaataaaccaaagacatttaattgaattattgtgatgttggctatgaat-atatgcgttaatacctgataaaatgaaaaggagaaaaagcaaagggag |
145 |
Q |
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| T |
41760945 |
atgaacaaaccaaagacatttaattgaattat---gatgttggctcttaatgatat-----aatacctgataaaatgaaaagaagaaggagcaaaggaag |
41761036 |
T |
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| Q |
146 |
aagcatgattatgagttgctttgccattgatga |
178 |
Q |
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| T |
41761037 |
aagcatgattatgagttgcttcgccattgatga |
41761069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 41761312 - 41761372
Alignment:
| Q |
316 |
ttctattgtgaaatttttgtattgactatcaataaatattgacagccccatctctttaata |
376 |
Q |
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| T |
41761312 |
ttctattctaaaaattttgtgttgactatcaataaatattgacaaacccatctctttaata |
41761372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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