View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_41 (Length: 328)
Name: NF10466_low_41
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 11664416 - 11664712
Alignment:
| Q |
19 |
tgttctgtagcacgtttcattggaaacaatggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattg |
118 |
Q |
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| T |
11664416 |
tgttctgtggcacgtttcattgggaacaatggattaaacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattg |
11664515 |
T |
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| Q |
119 |
atggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaatatttataattttattgataagaata |
218 |
Q |
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| T |
11664516 |
atggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaaaatttataattttattgataagaata |
11664615 |
T |
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| Q |
219 |
aag---tatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgtaccatgtctctttannnnnnncttgttatgtattcat |
312 |
Q |
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| T |
11664616 |
aagtaatatcaaatcatcaaataaatggaatgattttggtttaaccttaaaaaattgtgtatcatgtctctttatttttttcttgttatgtattcat |
11664712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 7344080 - 7343811
Alignment:
| Q |
19 |
tgttctgtagcacgtttcattggaaacaatggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattg |
118 |
Q |
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| T |
7344080 |
tgttctgtagcacgtttcattggaaacactggattaaacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattg |
7343981 |
T |
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| Q |
119 |
atggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatactt-caatatgaaaatatttataattttattgataagaat |
217 |
Q |
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| T |
7343980 |
atggagaaggagttgtctgcaaaagataatttcattgtccaaaagaggatgctgatgatacttcccata-gaaaa-aattataattttattaataagaat |
7343883 |
T |
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| Q |
218 |
aaagtatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgta-ccatgtctcttt |
288 |
Q |
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| T |
7343882 |
aaagtatcaaatcatcaaataacttgaatgattttggtttaaccttaaaaaaatgtgtattcatgtctcttt |
7343811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 11669796 - 11669858
Alignment:
| Q |
88 |
ctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
150 |
Q |
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| T |
11669796 |
ctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataattt |
11669858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 11656014 - 11656091
Alignment:
| Q |
74 |
tggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttt |
151 |
Q |
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| T |
11656014 |
tggagaatttgagtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataatttt |
11656091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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