View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_42 (Length: 318)
Name: NF10466_low_42
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_42 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 30006120 - 30005829
Alignment:
| Q |
17 |
tcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcca |
116 |
Q |
| |
|
||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30006120 |
tcaaattgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattctctacaacctcactaacattcacaacctcaccctcca |
30006021 |
T |
|
| Q |
117 |
aagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgca |
216 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30006020 |
aggcagctttctccaaagatataaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgca |
30005921 |
T |
|
| Q |
217 |
aaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagatctgatccttgaacctttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30005920 |
aaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagatctgatccttgaacctttg |
30005829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 29963374 - 29963110
Alignment:
| Q |
16 |
atcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcc |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| || |
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|
| T |
29963374 |
atcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctacc |
29963275 |
T |
|
| Q |
116 |
aaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgc |
215 |
Q |
| |
|
||| || ||||||| || || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
29963274 |
aaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgc |
29963175 |
T |
|
| Q |
216 |
aaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataa |
280 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29963174 |
aaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccataa |
29963110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 30011424 - 30011688
Alignment:
| Q |
16 |
atcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcc |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| || |
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|
| T |
30011424 |
atcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctacc |
30011523 |
T |
|
| Q |
116 |
aaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgc |
215 |
Q |
| |
|
||| || ||||||| || || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
30011524 |
aaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgc |
30011623 |
T |
|
| Q |
216 |
aaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataa |
280 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30011624 |
aaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccataa |
30011688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 29952268 - 29952006
Alignment:
| Q |
17 |
tcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcca |
116 |
Q |
| |
|
|||||||| |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
29952268 |
tcaaattgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctctacaacctcactaacattcacaacctcactcacca |
29952169 |
T |
|
| Q |
117 |
aagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgca |
216 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
29952168 |
aagcagctttctccaatgacttaatcaaaacatccaacttttccttcctaatagaaccaaacatctcaacttttgaagcactaagaagttttaaagtgca |
29952069 |
T |
|
| Q |
217 |
aaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccata |
279 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
29952068 |
aagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttggaaccata |
29952006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 29999682 - 29999397
Alignment:
| Q |
17 |
tcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||| |
|
|
| T |
29999682 |
tcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctcgacaatctcactaacattcacaacctcacctacca |
29999583 |
T |
|
| Q |
117 |
aagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgca |
216 |
Q |
| |
|
||| |||||||| ||||| |||||||||||| |||||| ||| || ||||||||||| || ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29999582 |
aagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgacttctcaacttttgaagcactaagaagtttcaaagtgca |
29999483 |
T |
|
| Q |
217 |
aaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagatctgatccttgaa |
302 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| || |||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
29999482 |
aaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaaccataggacatgagctctgatccttgaa |
29999397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 30045034 - 30045325
Alignment:
| Q |
17 |
tcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcca |
116 |
Q |
| |
|
||||||||||||||||||| | ||| || |||| ||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
30045034 |
tcaaattgctcatacttactccgaccaaacatcaacttatacacaatatcttctattagattctctacaacctcactaacattcacaacctcaccaacca |
30045133 |
T |
|
| Q |
117 |
aagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgca |
216 |
Q |
| |
|
|||||||||||| ||||| |||||||||| | ||||| ||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30045134 |
aagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaaagtgca |
30045233 |
T |
|
| Q |
217 |
aaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagatctgatccttgaacctttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
30045234 |
aaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctttggaaccataagacatgagctcagatccttgaatctttg |
30045325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 30070864 - 30071148
Alignment:
| Q |
17 |
tcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcca |
116 |
Q |
| |
|
||||||||||||||||||| | || || |||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30070864 |
tcaaattgctcatacttactccgtccaaacatcaacttatacacaatatcttctattagattctctactacctcactaacattcacaacctcaccaacca |
30070963 |
T |
|
| Q |
117 |
aagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgca |
216 |
Q |
| |
|
|||||||||||| ||||| |||||||||| | ||||| ||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30070964 |
aagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaaagtgca |
30071063 |
T |
|
| Q |
217 |
aaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagatctgatccttga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
30071064 |
aaatttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttggaaccatataacatgagctcagatccttga |
30071148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 287
Target Start/End: Complemental strand, 29944138 - 29943877
Alignment:
| Q |
26 |
tcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctccaaagcagctt |
125 |
Q |
| |
|
|||||||||| | |||||| | ||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29944138 |
tcatacttactccgacccaacaccatcttatacacaatatcctctataacattctctacagcctcactaacattcacaacctcaccctccagagcagctt |
29944039 |
T |
|
| Q |
126 |
tctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||| ||| || |
|
|
| T |
29944038 |
tctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaactttcgaagcactaagaagttttgaagtacaaagttttct |
29943939 |
T |
|
| Q |
226 |
cacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatga |
287 |
Q |
| |
|
||||||||||||||||| | |||| |||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
29943938 |
cacactacgccaataagagtcgtacttagaaaacgccaaccctttgcaaccataagacatga |
29943877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 29990979 - 29990708
Alignment:
| Q |
16 |
atcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctctactacctcactaacattcacaacctcaccctcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||||| || |
|
|
| T |
29990979 |
atcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataacattctctacaatctcactgacattcacaacctcacctacc |
29990880 |
T |
|
| Q |
116 |
aaagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgc |
215 |
Q |
| |
|
|||| |||||| | ||||| |||||||||| | |||||| ||| | ||||||||||| || ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29990879 |
aaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgacttctcaacttttgaagcactaagaagtttcaaagtgc |
29990780 |
T |
|
| Q |
216 |
aaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatga |
287 |
Q |
| |
|
| | |||| | ||||||||||||||||| | |||| |||||| |||| ||||||| |||||||||| |||| |
|
|
| T |
29990779 |
agagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccataagatatga |
29990708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 43805838 - 43805738
Alignment:
| Q |
182 |
tcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataag |
281 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||||||| ||||||| | |||||||||| | ||| || |||| |||| ||| |||||| |||||||||| |
|
|
| T |
43805838 |
tcaactttagaagcacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataag |
43805739 |
T |
|
| Q |
282 |
a |
282 |
Q |
| |
|
| |
|
|
| T |
43805738 |
a |
43805738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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