View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_45 (Length: 315)
Name: NF10466_low_45
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 6100084 - 6099802
Alignment:
| Q |
15 |
aagaagaaaaccaattagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaat |
114 |
Q |
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| T |
6100084 |
aagaagaaaaccaattagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaat |
6099985 |
T |
|
| Q |
115 |
tacaaacacatactttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgtcacacattag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6099984 |
tacaaacacatactttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgtcacacattag |
6099885 |
T |
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| Q |
215 |
taaaccaaggatatggaatttgtaagttcatacacagtcttcaaaatagttgtgtccaaggatcaagttctcgacgaataact |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6099884 |
taaaccaaggatatggaatttgtaagttcatacacagtctgcaaaatagttgtctccaaggatcaagttctcgacgaataact |
6099802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 28055466 - 28055752
Alignment:
| Q |
18 |
aagaaaaccaattagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
28055466 |
aagaaaaccaattagaagcaaatgaaaaggcaaataaga-taaaattgggatggtaacaacgatctcagcaaaggaaattacatcagggtgctcaattac |
28055564 |
T |
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| Q |
118 |
aaacacatactttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgt-------cacaca |
210 |
Q |
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|||| ||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||| |
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| T |
28055565 |
aaacgcatgctttgtcattctatttttatgctcttttaaactacaaaacaatcattcaaagcattccacctttagtaaattccgagttgacaacaacaca |
28055664 |
T |
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| Q |
211 |
ttagtaaaccaaggatatggaatttgtaagttcatacacagtcttcaaaatagttgt-gtccaaggatcaagttctcgacgaataact |
297 |
Q |
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|||||||||| |||| | ||| || ||||||||||||| |||| |||||||||||| |||||||||||||||| |||| ||||||| |
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| T |
28055665 |
ttagtaaacctaggaaaaggagttcgtaagttcatacatggtctgcaaaatagttgtattccaaggatcaagttcccgacaaataact |
28055752 |
T |
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