View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_46 (Length: 315)
Name: NF10466_low_46
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 8883987 - 8884288
Alignment:
| Q |
1 |
ggttcagctcttgttgattcctgatagaaccatttggaccccctgttcttgtttttgcatcgtatgtaccagcatcatgccacctataaatcaatactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8883987 |
ggttcagctcttgttgattcctgatagaaccatttggaccccctgttcttgtttttgcgtcgtatgtaccagcatcatgccacctataaatcaatattat |
8884086 |
T |
|
| Q |
101 |
atgttatacaatttatgtatatgtt--atagtaaaaggtttgtaaagttgaaattaatgtaacaaacgtacgctaatcgtagcatgagaggagcacattt |
198 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8884087 |
atgttatacaatttatgtatatgttttatagtaaaaggtttgtaaagttgaaattattgtaacaaacgtacgctaatcgtagcatgagaggagcacattt |
8884186 |
T |
|
| Q |
199 |
tttattagtgataaaagaacgaagatcgcgacaagcctcctcgatttctttaacatactctgcatcaactgcatatttagccatacttttcaaggctttg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
8884187 |
tttattagtgataaaagaacgaagatcgcgacgaacctcctcgatttctttaacatactctgcatcaactgcatatttagccatac-ttgcaaggctttg |
8884285 |
T |
|
| Q |
299 |
gtt |
301 |
Q |
| |
|
||| |
|
|
| T |
8884286 |
gtt |
8884288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University