View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_5 (Length: 665)

Name: NF10466_low_5
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_5
NF10466_low_5
[»] chr1 (1 HSPs)
chr1 (1-647)||(29847660-29848292)


Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Complemental strand, 29848292 - 29847660
Alignment:
Q  1 gaaggggtttttatcgggagatttaaattctaaaaacagacataatcacctacttactaacactttttctataaaaatattaaggtctaaattaatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29848292 gaaggggtttttatcgggagatttaaattctaaaaacagacataatcacctacttactaacactttt-ctataaaaatattaaggtctaaattaatatat 29848194  T
Q  101 tttttgtgccctaaaatatatcaagttttgcatttttaaaaaccatcgcatgcttttgtctctacaaatttcctccttaaaatattggaatgatgctctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29848193 tttttgtgccctaaaatatatcaagttttgcatttttaaaaaccatcgcatgcttttgtctctacaaatttcctccttaaaatattggaatgatactctc 29848094  T
Q  201 tctatgcaaggttgatctgaactagttggaaatactggacgaagagtcgtatgcttctaagacactcacttcgctcatgttttcaattagttgagatcaa 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  29848093 tctatgcaaggttgatttgaactagttggaaatactggacgaagagtcgtatgcttctaagacactcactccgctcatgttttcaactagttgagatcaa 29847994  T
Q  301 ccttccatggagatatttactagtcaagcaatgattttgattgtcctttttaggtctttctatccaatcatagtttgaaattgccgcagtataaactttt 400  Q
    | |||||||| ||||||||||| |||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||    
T  29847993 cattccatggggatatttactactcaagcaatgattttga-------------gtctttctatccaatcatagtttgaaattgccgcagtataaactttt 29847907  T
Q  401 tagagtttttgcaacgatattgcaacggtaatttcagccgtatcgactacattcttctgcaatataaaagtttgcatcgtaaccttaaccgttgtttaaa 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  29847906 tagagtttttgcaacgatatcgcaacggtaatttcagccgtatcgactacattctgctgcaatataaaagtttgcatcgtaaccttaacggtggtttaaa 29847807  T
Q  501 atcatgttccccaataaaaagttagttgcaagcttaagtttcaattgtcctccttaacaaccaaacatccttaaatatcagacaagatcaaaaacaatga 600  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29847806 atcatgttccccaataacaagttagttgcaagcttaagtttcaattgtcctccttaacaaccaaacatccttaaatatcagacaagatcaaaaacaatga 29847707  T
Q  601 catggtatcatgacatgtttggtagacagcagcagtaaccctcatac 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29847706 catggtatcatgacatgtttggtagacagcagcagtaaccctcatac 29847660  T

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