View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_52 (Length: 297)

Name: NF10466_low_52
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_52
NF10466_low_52
[»] chr5 (22 HSPs)
chr5 (1-281)||(30060305-30060585)
chr5 (1-281)||(30749579-30749859)
chr5 (1-281)||(30400013-30400290)
chr5 (1-239)||(30242262-30242500)
chr5 (1-239)||(30677058-30677296)
chr5 (4-236)||(30338415-30338647)
chr5 (1-165)||(29853363-29853527)
chr5 (4-236)||(30483385-30483617)
chr5 (40-239)||(30206500-30206699)
chr5 (1-236)||(30435797-30436032)
chr5 (1-229)||(29872165-29872390)
chr5 (1-236)||(30713315-30713550)
chr5 (40-229)||(30331060-30331249)
chr5 (98-239)||(17418150-17418291)
chr5 (1-120)||(30475472-30475591)
chr5 (43-152)||(17982972-17983081)
chr5 (42-87)||(30521556-30521601)
chr5 (42-87)||(30561896-30561941)
chr5 (49-86)||(15347065-15347102)
chr5 (48-81)||(16396737-16396770)
chr5 (49-86)||(17927655-17927692)
chr5 (49-85)||(15335696-15335732)
[»] chr7 (1 HSPs)
chr7 (1-165)||(26707387-26707551)
[»] chr4 (2 HSPs)
chr4 (1-239)||(20296472-20296710)
chr4 (40-126)||(52352049-52352135)
[»] chr1 (2 HSPs)
chr1 (43-164)||(7099474-7099595)
chr1 (40-164)||(7581648-7581772)
[»] chr3 (2 HSPs)
chr3 (49-86)||(8187165-8187202)
chr3 (59-87)||(25293834-25293862)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 30060585 - 30060305
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30060585 tcattctttcaagatagaaaaatggatgaattttctggcgacatttcattcaagatgcatgaccttgtccatgatcttgctcaatcagtaatggggcaag 30060486  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060485 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 30060386  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttgagttttgtagaactttgtcaaaagaaaaacatgattacttcccaac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  30060385 tttcaaaatagttgaatccttgcgaacatggtttgagttttgtagtactttttcaaaagaaaaacatgattacttcccaac 30060305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 30749859 - 30749579
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30749859 tcattctttcaagatagaaaaatggatgaattttctggcgacatttcattcaagattcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 30749760  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  30749759 aatgtatgtatttggagaatgcaaacttgactagtttgtcgaaaagcacacaccatattagttttgacaataacgactcgttatccttcgacaaggatgc 30749660  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttgagttttgtagaactttgtcaaaagaaaaacatgattacttcccaac 281  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||    
T  30749659 tttcaaaatagttgaatccttgcgaacatggtttgagttgtgtagtattttgtcaaaagaaaaacatgattacttcccaac 30749579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 30400290 - 30400013
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  30400290 tcattctttcaagacaaaaaaatggatgaattttctggcaacatttcattcaagatgcatgatcttgtccatgatctcgctaagtcagtaatggggcaag 30400191  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||  | |  | | |||||| |||||  ||| |||    
T  30400190 aatgtatatatttggagaatgcaaacatgactagtttgtcaaaaagcacacaccacataagttttaactctgataatttgttatcattcgatgagggtgc 30400091  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttgagttttgtagaactttgtcaaaagaaaaacatgattacttcccaac 281  Q
     |||| || |||||||||||||||||||||||||||||||| |   |||||  |||||||| |||| ||||||||||||||    
T  30400090 cttcagaaaagttgaatccttgcgaacatggtttgagttttct---acttttccaaaagaagaacaggattacttcccaac 30400013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30242262 - 30242500
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    ||||| |||||||| |  ||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  30242262 tcattttttcaagacagcaaaatggatgaatattctggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggccag 30242361  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    |||||||||||||||||||   |||| |||| ||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||| || ||| ||||    
T  30242362 aatgtatgtatttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacattggttttgactacaaagacttgttatcctttgataagaatgc 30242461  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttgagtt 239  Q
    |||||||| ||||||||||||| |||||| |||| ||||    
T  30242462 tttcaaaaaagttgaatccttgagaacattgtttcagtt 30242500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30677058 - 30677296
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||||||||||| ||| |||||||||| ||| || |||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||| ||    
T  30677058 tcattctttcaagatagaaagatggatgaatattctggagacatttcttttaagatgcatgatcttgtccatgatctcgctcaattagtaatggggccag 30677157  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    |||||||||||||||||||   |||| |||| ||||||||||||||||||||||||||| ||||||||   ||||||| ||||||||| || ||| ||||    
T  30677158 aatgtatgtatttggagaaaaaaaacatgaccagtttgtcaaaaagcacacaccacattggttttgacctcaaagacttgttatcctttgataagaatgc 30677257  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttgagtt 239  Q
    |||||||| ||||||||||||| |||||| |||| ||||    
T  30677258 tttcaaaaaagttgaatccttgagaacattgtttcagtt 30677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 30338415 - 30338647
Alignment:
Q  4 ttctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaat 103  Q
    |||||||||||||  || |||||||||| ||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30338415 ttctttcaagatagcaagatggatgaatattctggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaat 30338514  T
Q  104 gtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgcttt 203  Q
    |||||| ||||||||||  ||||  ||||| ||||||||||||||||||||||||| |||||||||  ||  |||  |||||||||||  |  |||||||    
T  30338515 gtatgtgtttggagaataaaaacacgactaatttgtcaaaaagcacacaccacattggttttgacagcaacaactttttatccttcgatgaaaatgcttt 30338614  T
Q  204 caaaatagttgaatccttgcgaacatggtttga 236  Q
    ||||| |||||||||||||||||| | ||||||    
T  30338615 caaaaaagttgaatccttgcgaactttgtttga 30338647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 29853527 - 29853363
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    ||||||||||||||||| || ||||||||||  || || |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29853527 tcattctttcaagatatcaagatggatgaatactctggagacatttttttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaag 29853428  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagtttt 165  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  29853427 aatgtgtgtatttggagaatgcaaacatgactagtttgacaaaaagcacacaccacataagtttt 29853363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 30483617 - 30483385
Alignment:
Q  4 ttctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaat 103  Q
    |||||||||||||  || |||||||||| ||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30483617 ttctttcaagatagcaagatggatgaatattctggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaat 30483518  T
Q  104 gtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgcttt 203  Q
    ||| || ||||||||||  ||||  ||||| ||||||||||||||||||||||||| ||||| |||  ||  | |  |||||||||||  |  |||||||    
T  30483517 gtacgtgtttggagaataaaaacacgactaatttgtcaaaaagcacacaccacattggttttaacagcaagaaatttttatccttcgatgaaaatgcttt 30483418  T
Q  204 caaaatagttgaatccttgcgaacatggtttga 236  Q
    ||||| |||||||||||||||||||| ||||||    
T  30483417 caaaaaagttgaatccttgcgaacattgtttga 30483385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 30206699 - 30206500
Alignment:
Q  40 gacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgt 139  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  30206699 gacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcagtaatgggtcaagaatgtatgtatttggagaattcaaacatgactactttgt 30206600  T
Q  140 caaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgctttcaaaatagttgaatccttgcgaacatggtttgagtt 239  Q
    ||||||||||||||||||| |||||| || || | |||  |||||| |||||| ||| ||| ||||  | ||||||||||||| |||||| |||| ||||    
T  30206599 caaaaagcacacaccacataagttttcactatgatgacgtgttatcattcgacgagggtgccttcaggaaagttgaatccttgagaacattgtttcagtt 30206500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30436032 - 30435797
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    ||||||||||||||||  || |||||||||| ||  || |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  30436032 tcattctttcaagatagcaagatggatgaatattttggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaacggggaaag 30435933  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    |||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||| |||||| ||  | || | | |||||| |||||  ||| |||    
T  30435932 aatgtatgtatttggagaatgcaaacatgactaatttgacaaaaaacacacaccacataagttttaactctgaaaatttgttatcattcgatgagggtgc 30435833  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttga 236  Q
     ||||||| |||||||||||| ||||||| ||||||    
T  30435832 cttcaaaaaagttgaatccttacgaacattgtttga 30435797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29872390 - 29872165
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||||||||||   || |||||||||| ||| || |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29872390 tcattctttcaagatggcaagatggatgaatattctggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcaataatggggcaag 29872291  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    |||||||| ||||||||||   |||| |||| |||||||||||||||||||||||||||  | ||||| | ||||    ||||||||| ||  |  ||||    
T  29872290 aatgtatgcatttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacattgttgttgactacaaag---tgttatcctttgatgaaaatgc 29872194  T
Q  201 tttcaaaatagttgaatccttgcgaacat 229  Q
    |||||||| ||||||||||||| ||||||    
T  29872193 tttcaaaaaagttgaatccttgagaacat 29872165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30713315 - 30713550
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||| ||||||   || |||||||||| ||| ||  ||||||| || || ||||||||||||||||||||||| ||||||||||||| |||| |||    
T  30713315 tcattcttccaagattgcaagatggatgaatattctggaaacatttcttttaaaatgcatgatcttgtccatgatctcgctcaatcagtaacggggaaag 30713414  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    ||||| |||||||||||||||||||| |||||| |||| |||||| |||||||||||| |||||| ||  | || | | |||||| |||||  ||| |||    
T  30713415 aatgtgtgtatttggagaatgcaaacatgactaatttgacaaaaaacacacaccacataagttttcactctgaaaaattgttatcattcgatgagggtgc 30713514  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttga 236  Q
     ||||||| |||||||||||| ||||||| ||||||    
T  30713515 cttcaaaaaagttgaatccttacgaacattgtttga 30713550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 30331060 - 30331249
Alignment:
Q  40 gacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgt 139  Q
    |||||||| || |||| || ||||||| || ||||||||||||||||| || ||| |||| ||| ||||||| |||||||||||||| |||||||||||     
T  30331060 gacatttctttaaagacgcgtgatcttttcaatgatcttgctcaatcaatactggagcaacaatatatgtatctggagaatgcaaacatgactagtttga 30331159  T
Q  140 caaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgctttcaaaatagttgaatccttgcgaacat 229  Q
    |||||||||| || ||||| |||||||||   ||  | | ||||||  ||||  | | ||| ||||||| ||||||||||||||||||||    
T  30331160 caaaaagcacccatcacataagttttgactccaataatttgttatcaatcgatgacggtgccttcaaaaaagttgaatccttgcgaacat 30331249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 17418150 - 17418291
Alignment:
Q  98 aagaatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaagga 197  Q
    |||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||  ||||| ||  | | |||||| ||||  || |  ||||    
T  17418150 aagaatgtatgtatttagagaatgcaaacatgattattttgtcaaaaagcacacaccacatatgttttcactctgatgactcgctatcactcaatgagga 17418249  T
Q  198 tgctttcaaaatagttgaatccttgcgaacatggtttgagtt 239  Q
    ||| ||||||| |||||||||||||||||||| |||| ||||    
T  17418250 tgccttcaaaaaagttgaatccttgcgaacattgtttcagtt 17418291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30475591 - 30475472
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||| ||||| || || || ||||| | ||| || |||||| | |||||||||||||| || || |||||||||||||||||||| ||||||  ||    
T  30475591 tcattcttccaagacatcaagatagatgattattcaggagacattactttcaagatgcatgacctagtgcatgatcttgctcaatcagttatggggtcag 30475492  T
Q  101 aatgtatgtatttggagaat 120  Q
    | ||||||  ||||||||||    
T  30475491 agtgtatgattttggagaat 30475472  T

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Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 17983081 - 17982972
Alignment:
Q  43 atttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgtcaa 142  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||||||||||  |||||| |||||| ||  ||| |||||||||    ||||||  |||||||    
T  17983081 atttctttcaaaatgcacgatctcgtccatgatcttgctcaatcagtagcggggcatgaatgtgtggttttagagaatgcatctgtgactaacttgtcaa 17982982  T
Q  143 aaagcacaca 152  Q
    |||| |||||    
T  17982981 aaagtacaca 17982972  T

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Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 30521556 - 30521601
Alignment:
Q  42 catttcattcaagatgcatgatcttgtccatgatcttgctcaatca 87  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||    
T  30521556 catttctttcaagttgcatgatcttgtccatgatcttgctcaatca 30521601  T

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Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 30561896 - 30561941
Alignment:
Q  42 catttcattcaagatgcatgatcttgtccatgatcttgctcaatca 87  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||    
T  30561896 catttctttcaagttgcatgatcttgtccatgatcttgctcaatca 30561941  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 15347102 - 15347065
Alignment:
Q  49 ttcaagatgcatgatcttgtccatgatcttgctcaatc 86  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  15347102 ttcacgatgcatgatcttgttcatgatcttgctcaatc 15347065  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 16396770 - 16396737
Alignment:
Q  48 attcaagatgcatgatcttgtccatgatcttgct 81  Q
    ||||||||||||||||||||| ||||||||||||    
T  16396770 attcaagatgcatgatcttgttcatgatcttgct 16396737  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 17927692 - 17927655
Alignment:
Q  49 ttcaagatgcatgatcttgtccatgatcttgctcaatc 86  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  17927692 ttcaaaatgcatgatcttgttcatgatcttgctcaatc 17927655  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 15335732 - 15335696
Alignment:
Q  49 ttcaagatgcatgatcttgtccatgatcttgctcaat 85  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  15335732 ttcaaaatgcatgatcttgttcatgatcttgctcaat 15335696  T

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Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26707551 - 26707387
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    ||||||||||||||    || |||| ||||| ||| || |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  26707551 tcattctttcaagactgtaagatgggtgaatattctggagacatttctttcaagatgcatgatcttatccatgatctcgctcaatcagtaatgggacaag 26707452  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagtttt 165  Q
    |||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||    
T  26707451 aatgcatgtatttggagaatgcaaacatgagtagtttgacaaaaagcacacaccacataagtttt 26707387  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20296472 - 20296710
Alignment:
Q  1 tcattctttcaagatataaaaatggatgaattttccggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaag 100  Q
    |||||||||||||| || ||||| ||||||| |||  | || ||||  ||||||||||||||||||||  |||||||   ||| |||||| ||||| |||    
T  20296472 tcattctttcaagaaatcaaaatagatgaatattctagagatatttatttcaagatgcatgatcttgtttatgatctccttcattcagtagtggggaaag 20296571  T
Q  101 aatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgc 200  Q
    ||||||||||||||||| ||  |||| | |||| |||||||  |||||||||||||||| |||||||| | | ||||| ||||||| || |||||| |||    
T  20296572 aatgtatgtatttggaggataaaaacgttactaatttgtcacgaagcacacaccacattggttttgactacacagacttgttatccatcaacaagggtgc 20296671  T
Q  201 tttcaaaatagttgaatccttgcgaacatggtttgagtt 239  Q
     ||||||  |||||||||||||||||||| |||| ||||    
T  20296672 cttcaaagaagttgaatccttgcgaacattgtttcagtt 20296710  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 52352135 - 52352049
Alignment:
Q  40 gacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaac 126  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||| |  |||||| ||| ||||||  | |||||||| |||||    
T  52352135 gacatttctttcaagatgcatgatcttgtacatgatcttgctcaatcaattgtggggccagagtgtatgattatggagaatacaaac 52352049  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 7099595 - 7099474
Alignment:
Q  43 atttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgtcaa 142  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||  ||| || |||||| |  ||||||  |||||||    
T  7099595 atttctttcaaaatgcatgatctcgtccatgatcttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaa 7099496  T
Q  143 aaagcacacaccacattagttt 164  Q
    |||||||||| || ||||||||    
T  7099495 aaagcacacatcatattagttt 7099474  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 7581648 - 7581772
Alignment:
Q  40 gacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgt 139  Q
    |||||||| ||||| |||||||||||  ||||||||||||||| ||||||| ||| |||||||||||||  ||| ||||||| |   ||||| | | |||    
T  7581648 gacatttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgtatggttttagagaatgaatgtttgacaaatatgt 7581747  T
Q  140 caaaaagcacacaccacattagttt 164  Q
    |||||||||| || || ||||||||    
T  7581748 caaaaagcacccatcatattagttt 7581772  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 8187202 - 8187165
Alignment:
Q  49 ttcaagatgcatgatcttgtccatgatcttgctcaatc 86  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8187202 ttcaagatgcatgatcttgtacatgatcttgctcaatc 8187165  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 25293834 - 25293862
Alignment:
Q  59 atgatcttgtccatgatcttgctcaatca 87  Q
    |||||||||||||||||||||||||||||    
T  25293834 atgatcttgtccatgatcttgctcaatca 25293862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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