View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_54 (Length: 291)
Name: NF10466_low_54
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 884914 - 885188
Alignment:
| Q |
1 |
gattctatctagcttggaattaacctccacaattgggtataatctggcttatgttgtatttgggtgttgtggatcgaaagtaatcataggtttttcaatt |
100 |
Q |
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| T |
884914 |
gattctctctagcttggggttaacctccacaattgggtataatatggcttatgttgtatttgggtgttgtggacttaaagtaatcataggtttttcaact |
885013 |
T |
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| Q |
101 |
acaaagctaaattgattacgcagctgttggacaaagtaaaagtttctacgttttgatggctgaaa-ctgaaaatgctagtttttcttttggccatcatat |
199 |
Q |
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| T |
885014 |
acaaagctaaattgactacgcagc---tggacaaagtaaaagtttcttcgttttggtggctgaaagctgaaaatgctagtttttcttttggctatcatat |
885110 |
T |
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| Q |
200 |
gtggtagcagtaaccccttgtttgtttaggtattgattgattttannnnnnnctattattacttgaggatgcttttgatgt |
280 |
Q |
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| T |
885111 |
gtggtagcagcaaccccatgtttattt-gctattgattgattttatttttt--tattattacttgaggatgcttttgatgt |
885188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 46843169 - 46843263
Alignment:
| Q |
133 |
aaagtaaaagtttctacgttttgatggctgaaa-ctgaaaatgctagtttttcttttggccatcatatgtggtagcagtaaccccttgtttgttt |
226 |
Q |
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| T |
46843169 |
aaagtaaaagtttcttacttttgatggatgaaagctaaaaatgttagtttttcttttgaccattatatgtggtggcaacaatcctttgtttgttt |
46843263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 242
Target Start/End: Complemental strand, 55731076 - 55730925
Alignment:
| Q |
92 |
ttttcaattacaaagctaaattgattacgcagctgttggacaaagtaaaagtttctacgttttgatggctgaaa-ctgaaaatgctagtttttcttttgg |
190 |
Q |
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| T |
55731076 |
ttttcaacaacaaaactaaatcaattacgcagctggtggacaaagtaaaagtttattctttttggttgttgaaaggtaatattgctagctttctttttgt |
55730977 |
T |
|
| Q |
191 |
ccatcatatgtggtagcagtaaccccttgtttgtttaggtattgattgattt |
242 |
Q |
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| T |
55730976 |
ccatcatatgtggtggcaacaaccatttgtttgcttaggtatcaattgattt |
55730925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 32797540 - 32797678
Alignment:
| Q |
50 |
tatgttgtatttgggtgttgtggatcgaaagtaatcataggtttttcaattacaaagctaaattgattacgcagctgttggacaaagtaaaagtttctac |
149 |
Q |
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| T |
32797540 |
tatgttatgtttgggtgttgtggaccgaaaggaatcatagactttttaacaacaaagcttaatccattatgcaactgttagacaaagtaaaaatatcttc |
32797639 |
T |
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| Q |
150 |
gttttgatggctgaaa-ctgaaaatgctagtttttcttt |
187 |
Q |
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| T |
32797640 |
tttttggtggttgaaagctaacaatactagtttttcttt |
32797678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 28741299 - 28741395
Alignment:
| Q |
50 |
tatgttgtatttgggtgttgtggatcgaaagtaatcataggtttttcaattacaaagctaaattgattacgcagctgttggacaaagtaaaagtttct |
147 |
Q |
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| T |
28741299 |
tatgttgtatgtggg-gttgtggaatgaaagaaatcataaacttttcaaaaacaaagtcaaatcgattacgcagttgctggaaaaagtaaaagtttct |
28741395 |
T |
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