View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_56 (Length: 287)
Name: NF10466_low_56
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 5159596 - 5159319
Alignment:
| Q |
1 |
gtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag-nnnn |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159596 |
gtgtttggtagtattcataccttcaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaa |
5159497 |
T |
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| Q |
100 |
nnnngagagtacatagttagagatataattttcaataaataaatctgtaagaactattcccc-nnnnnnntttacaaattatgtttgactatttaaaaaa |
198 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5159496 |
aaaagagagtacatagttagagatataa-tttcaataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaa |
5159398 |
T |
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| Q |
199 |
tttcaag-nnnnnnngagtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaatt |
276 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159397 |
tttcaagttttttttgagtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaatt |
5159319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 5195229 - 5195065
Alignment:
| Q |
1 |
gtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcag----n |
96 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5195229 |
gtgtttggtagtattgataccttcaattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaa |
5195130 |
T |
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| Q |
97 |
nnnnnnngagagtacatagttagagatataattttcaataaataaatctgtaagaactattcccc |
161 |
Q |
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| T |
5195129 |
aaaaaaagagagtacatagttagagatataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5181831 - 5181710
Alignment:
| Q |
1 |
gtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnn |
100 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5181831 |
gtgtttggtagtattgataccttcaattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaa |
5181732 |
T |
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| Q |
101 |
nnngagagtacatagttagaga |
122 |
Q |
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| T |
5181731 |
aaagagagtacatagttagaga |
5181710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 5172581 - 5172489
Alignment:
| Q |
2 |
tgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca |
94 |
Q |
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|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
5172581 |
tgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaacatctgca |
5172489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 4843041 - 4843133
Alignment:
| Q |
2 |
tgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca |
94 |
Q |
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| T |
4843041 |
tgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaacatctgca |
4843133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 5181608 - 5181547
Alignment:
| Q |
215 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaatt |
276 |
Q |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaatt |
5181547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5212808 - 5212716
Alignment:
| Q |
1 |
gtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgc |
93 |
Q |
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|||||||||| |||| ||||||| || |||||||||||||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
5212808 |
gtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
105 |
agagtacatagttagagatataattttcaataaat |
139 |
Q |
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| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
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