View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_58 (Length: 279)
Name: NF10466_low_58
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 508097 - 508348
Alignment:
| Q |
17 |
cattcagatgggagagtaattccttttgtgccttggttaccaaattattcagtgaattctcaaatcaacgattacttgactagagcttaatacatattaa |
116 |
Q |
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| T |
508097 |
cattcagatgggagagtaattccttttgtgccttggttaccaaattattcagtgaattctcaaatcaacgattacttgactagagcttaatacatattaa |
508196 |
T |
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| Q |
117 |
tggtaacaattattcttgatattattaatgattgttgtgtcactctgtttcaaggaaaagtatgccttaaaatatgctgctcgtatggagtactttcact |
216 |
Q |
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| T |
508197 |
tggtaacaattattcttgatattattaatgattgttgtgtcactctgttttaaggaaaagtatgccttaaaatatgctgctcgtatggagtactttcact |
508296 |
T |
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| Q |
217 |
tataaacgaccgcatatatgtggcccttgtttgagatgcggacggtgttcat |
268 |
Q |
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| T |
508297 |
tataaacgaccgcatatatgtggcccttgtttgagatgcggacggtgttcat |
508348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 547471 - 547376
Alignment:
| Q |
173 |
aaagtatgccttaaaatatgctgctcgtatggagtactttcacttataaacgaccgcatatatgtggcccttgtttgagatgcggacggtgttcat |
268 |
Q |
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| T |
547471 |
aaagtatgccttaaaatatgccgttcgtatggagtacctttgcttataaatgaccgtatagatgtagcccttgcttgtgatgcggatggtgttcat |
547376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 547713 - 547610
Alignment:
| Q |
17 |
cattcagatgggagagtaattccttttgtgccttggttaccaaattattcagtgaattctcaaatcaacgattacttgactagagcttaatacatattaa |
116 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||||||| ||||| || ||| ||||| ||||||| ||||||| |||| |||| ||| |
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| T |
547713 |
cattcagatgtgacagtaattccttttgtgctttggttaccaaattatatagtgacttttcatatcaattattacttcactagagtctaattcataataa |
547614 |
T |
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| Q |
117 |
tggt |
120 |
Q |
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|||| |
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| T |
547613 |
tggt |
547610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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