View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_6 (Length: 657)
Name: NF10466_low_6
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 642
Target Start/End: Complemental strand, 22041415 - 22040801
Alignment:
| Q |
10 |
agatgaaaaggagaggatggatgtgagttgccattgatctacttgttctccttcaaagaaacacaaacacaaacacaatcaaacaaattagagcaacacg |
109 |
Q |
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| T |
22041415 |
agatgaaaaggagaagatgtatgtgagttgccattgaactacttgttctccttcaaagaaacacga------------tgaatcaaattagagcaacacg |
22041328 |
T |
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| Q |
110 |
gtaactaatttcaatcacttaagcggtagcaacaaattagagaagnnnnnnnnnnntgaaactctagagaagtggaatggaaaatccataagaaaactgc |
209 |
Q |
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| T |
22041327 |
gcaactaatttcaatcacttaagtagtagcaacaaattagagaagaaaaaaaat--tgaaactctagagaagttgaatggaaaatccataagaaaactgc |
22041230 |
T |
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| Q |
210 |
acatttatttatgttaattaaagaacttacttgtttgatatagccaaaaggtggaaacgaaaggagcttacaattatttgttatgggactagataaaaac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
22041229 |
acatttatttatgttaattaaagaacttacttgtttgatatagccaaaaggtggaaacgaaaggagcttacaattatttgttatgggactacatgaaaac |
22041130 |
T |
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| Q |
310 |
caaaatgtgtttcatttaagtgaaaggaacttacaattatttgttctgtgact--atgacagccaaaaagtggaacttactatatatgttgtggtccata |
407 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
22041129 |
caaaatgtgtttca-ttaagtgaaaggagcttacaattatttgttctgtgattagatgaaagccaaaaagtggaacttcctatatatgttgtggtccata |
22041031 |
T |
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| Q |
408 |
aacgtccttaattaagatgctagtaacaaaaataaacattaaagaagcaaacttgtgactt---atccttgtcatccacctacaatcatctatgccaccc |
504 |
Q |
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| T |
22041030 |
aacgtccttaattaagatgctcgtaacaaaaataaacattaaagaagaaaacttgtgacttccaatccttgtcatccacctacaatcatctatgccaccc |
22040931 |
T |
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| Q |
505 |
tataaaagaagaaacaacatagacatacattttcttcccatcagtgtgcaaataaagaaatatggaaaacatgtgatagttaggcatgaggaatcctatg |
604 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
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| T |
22040930 |
tataaaagaagaaaca----agacatacattttcttcccatcagtgtgcaaataaagaaatatagaaaacatctgatggttaggcatgaggaatcctatg |
22040835 |
T |
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| Q |
605 |
agtcactcactcactcatgacaacaactttggtctata |
642 |
Q |
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|| ||||||||||||||||||||||||| |||||| |
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| T |
22040834 |
ag----tcactcactcatgacaacaactttgatctata |
22040801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 389 - 591
Target Start/End: Original strand, 25327963 - 25328168
Alignment:
| Q |
389 |
atatatgttgtggtccataaacgtccttaattaagatgctagtaacaaaaataaacattaaagaagcaaacttgtgactt---atccttgtcatccacct |
485 |
Q |
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|||||||||||||||||||||| ||||| ||||| ||||||||| ||| | ||| | ||||| | || ||||||||| |||| |||||| || || |
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| T |
25327963 |
atatatgttgtggtccataaacctccttcattaaaatgctagtactaaagagaaatagtaaagta---aatttgtgactttcaatccctgtcattcaact |
25328059 |
T |
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| Q |
486 |
acaatcatctat----gccaccctataaaagaagaaacaacatagacatacattttcttcccatcagtgtgcaaataaagaaatatggaaaacatgtgat |
581 |
Q |
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| T |
25328060 |
acaatcatctattaatgccatcctataaaagaagaaaaaacataggaatacattttctttccatca-tgtgcaaataaagaaatgtggaaaacatgtgat |
25328158 |
T |
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| Q |
582 |
agttaggcat |
591 |
Q |
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|| ||||||| |
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| T |
25328159 |
agctaggcat |
25328168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 573
Target Start/End: Original strand, 22004571 - 22004646
Alignment:
| Q |
496 |
atgccaccctataaaagaagaaacaacatagacatacattttcttcccatcagtgtgcaaataaagaaatatggaaaa |
573 |
Q |
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|||||||||||||||| |||||||||||||| ||| ||||| || |||| ||||||||||||| |||| |||||||| |
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| T |
22004571 |
atgccaccctataaaacaagaaacaacataggcattcattt--tttccatgagtgtgcaaataaggaaacatggaaaa |
22004646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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