View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_64 (Length: 253)

Name: NF10466_low_64
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_64
NF10466_low_64
[»] chr2 (3 HSPs)
chr2 (147-241)||(39439648-39439742)
chr2 (150-241)||(19814980-19815071)
chr2 (1-86)||(39439502-39439587)
[»] scaffold0122 (2 HSPs)
scaffold0122 (147-241)||(31295-31389)
scaffold0122 (1-30)||(31103-31132)
[»] chr5 (2 HSPs)
chr5 (147-241)||(14188474-14188568)
chr5 (1-30)||(14188283-14188312)
[»] chr4 (3 HSPs)
chr4 (156-229)||(39096695-39096767)
chr4 (162-229)||(39095880-39095946)
chr4 (156-218)||(23176344-23176403)
[»] chr1 (1 HSPs)
chr1 (184-229)||(15911226-15911270)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 39439648 - 39439742
Alignment:
Q  147 atccatcgatagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagagaatccaattcccttttcctttgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39439648 atccatcgatagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagaggatccaattcccttttcctttgc 39439742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 19814980 - 19815071
Alignment:
Q  150 catcgatagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagagaatccaattcccttttcctttgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  19814980 catcgatagatccatctaatggctaatattaagtgaagaagagagaaggagataaattttgaaggagaggatccaattccctttttctttgc 19815071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 39439502 - 39439587
Alignment:
Q  1 tgaagaagcttccggagtagtaaaacaccgtccannnnnnngtccataccaatcgagttaagcttacatggaaaaaaccccgccca 86  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||    
T  39439502 tgaagaagcttccggagtagtaaaacaccgtccatttttttgtccataccaatcgagttaagcttacaaggaaaaaaccccgccca 39439587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 31295 - 31389
Alignment:
Q  147 atccatcgatagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagagaatccaattcccttttcctttgc 241  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31295 atccattgatagatccacctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagaggatccaattccctttttctttgc 31389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31103 - 31132
Alignment:
Q  1 tgaagaagcttccggagtagtaaaacaccg 30  Q
    ||||||||||||||||||||||||||||||    
T  31103 tgaagaagcttccggagtagtaaaacaccg 31132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 14188474 - 14188568
Alignment:
Q  147 atccatcgatagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagagaatccaattcccttttcctttgc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| ||||||    
T  14188474 atccatcgatagatccatctaatggctaatattaagtgaagaagagaaaaggagacaaattttgaaggaaaggatccaattccctttttctttgc 14188568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14188283 - 14188312
Alignment:
Q  1 tgaagaagcttccggagtagtaaaacaccg 30  Q
    ||||||||||||||||||||||||||||||    
T  14188283 tgaagaagcttccggagtagtaaaacaccg 14188312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 39096695 - 39096767
Alignment:
Q  156 tagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagagaatccaattcc 229  Q
    ||||| ||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||  ||||||||||    
T  39096695 tagattcatctaatggctaatattaaaggaaggagagagaaggagac-aattttgaaggagatgatccaattcc 39096767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 39095946 - 39095880
Alignment:
Q  162 catctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagagaatccaattcc 229  Q
    |||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||| |||| |||||    
T  39095946 catctaatggataatattaagggaaggagagagaaggagac-aattttgaaggagaggatccgattcc 39095880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 23176403 - 23176344
Alignment:
Q  156 tagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagag 218  Q
    ||||| |||||||||| ||||||||||  ||| |||||||||||||| |||||||||||||||    
T  23176403 tagattcatctaatggataatattaag--aaggagagagaaggagac-aattttgaaggagag 23176344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 15911226 - 15911270
Alignment:
Q  184 gaagaagagagaaggagacaaattttgaaggagagaatccaattcc 229  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  15911226 gaaggagagagaaggagacaa-ttttgaaggagaggatccaattcc 15911270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University