View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_65 (Length: 252)
Name: NF10466_low_65
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3785281 - 3785047
Alignment:
| Q |
1 |
gaaaatcaaaataaaaacacttgtattgtttatagctactgtaaattataacaaagcaaaggaaacataaaaatcattttaattttccttgtgcactatc |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3785281 |
gaaaatcaaaataaaaacacttgtatagtttatagctactgtaaattataacaaagcaaaggaaacataaaaatcattttaattttccttgtgtactatc |
3785182 |
T |
|
| Q |
101 |
tggacaatgtcggcataaggaaggacaaaatcgtctgtttcaatgca----ttaatcttaaannnnnnnnnnnnccataaaatctttgctgaagttattg |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||||||||||||||| |
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| T |
3785181 |
tggacaaggtcggcataaggaaggacaaaatcgtctgtttcagtgaagatgtaaatcttaaatctctttctctcccat--aatctttgctgaagttattg |
3785084 |
T |
|
| Q |
197 |
aatatcagcttgagaagtacattattaaagactacaa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3785083 |
aatatcagcttgagaagtacattattaaagactacaa |
3785047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 3769480 - 3769376
Alignment:
| Q |
28 |
gtttatagctactgtaaattataacaaagcaaaggaaacataaaaatcattttaattttccttgtgcactatctggacaatgtcggcataaggaaggaca |
127 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| | | ||||||||||| |||||||||| ||| |
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| T |
3769480 |
gtttctagctactgtaaaatataacaaagcaaaggaaacataacaatcattttaatttttcttgtgtaatcattggacaatgtctacataaggaagaaca |
3769381 |
T |
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| Q |
128 |
aaatc |
132 |
Q |
| |
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||||| |
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| T |
3769380 |
aaatc |
3769376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1079028 - 1078896
Alignment:
| Q |
1 |
gaaaatcaaaataaaaacactt-----gtattgtttatagctactgtaaattataacaaagcaaaggaaacataaaaatcattttaattttccttgtgca |
95 |
Q |
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|||||| ||||||||||||||| |||| |||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||| | |
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| T |
1079028 |
gaaaatgaaaataaaaacacttagattgtatagtttctagctactgtaaaatataacaaagaaaaggaaacataacaatcattttaatttttcttgtgta |
1078929 |
T |
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| Q |
96 |
ctatctggacaatgtcggcataaggaaggacaa |
128 |
Q |
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| T |
1078928 |
atcactggacaatgtctacataaggaaggacaa |
1078896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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