View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_66 (Length: 251)

Name: NF10466_low_66
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_66
NF10466_low_66
[»] chr1 (2 HSPs)
chr1 (1-245)||(52421225-52421459)
chr1 (107-150)||(38877680-38877723)
[»] chr5 (1 HSPs)
chr5 (124-245)||(37124367-37124487)
[»] chr3 (1 HSPs)
chr3 (107-184)||(50621707-50621784)
[»] chr8 (2 HSPs)
chr8 (107-167)||(45512843-45512903)
chr8 (115-165)||(9989310-9989360)
[»] chr7 (1 HSPs)
chr7 (113-166)||(41626853-41626906)
[»] chr6 (3 HSPs)
chr6 (114-155)||(2079220-2079261)
chr6 (129-177)||(20834423-20834471)
chr6 (107-167)||(12134248-12134308)
[»] chr4 (4 HSPs)
chr4 (107-168)||(38904066-38904127)
chr4 (107-155)||(29398706-29398754)
chr4 (107-153)||(40933243-40933289)
chr4 (114-167)||(20105825-20105878)
[»] chr2 (2 HSPs)
chr2 (107-156)||(37393514-37393563)
chr2 (107-153)||(28908489-28908535)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 52421459 - 52421225
Alignment:
Q  1 ataactaatattcactacaaagattttttgtaaatggtaaatacttctaaactccaacatataactgtattaaatttaaactctacttattttcaccaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421459 ataactaatattcactacaaagattttttgtaaatggtaaa----------ctccaacatataactgtattaaatttaaactctacttattttcaccaat 52421370  T
Q  101 ctttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatattatccgtcttaaagtta 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  52421369 ttttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaacattgtccgtcttaaagtta 52421270  T
Q  201 ttcaataaaatttctccttcaacatgagtggtactttcatctcac 245  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  52421269 ttcaataaaatttctccttcaacatgagtggtactttcatatcac 52421225  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 38877680 - 38877723
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagtt 150  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  38877680 aacatcctcatctctgctacacttattttattctcgtgttagtt 38877723  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 37124487 - 37124367
Alignment:
Q  124 tacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaac 223  Q
    |||||| ||| |||||||||||| | ||||||  ||||||||||||| |||||| || ||| || |||||| | || | |||| |||||||||||| |||    
T  37124487 tacactgattgtattctcgtgttgggtcttcaccgtccaacactcta-ttcatataacattgtcggtcttacacttgtccaatgaaatttctcctttaac 37124389  T
Q  224 atgagtggtactttcatctcac 245  Q
     |||||||||||||||| ||||    
T  37124388 ttgagtggtactttcatttcac 37124367  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 50621707 - 50621784
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatatt 184  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||| | |||  ||||||||  |||| ||||||||    
T  50621707 aacattctcatctccgctacacttattttatcctcgtattagttcttgactgttgaacactctgtttcacacaatatt 50621784  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 45512843 - 45512903
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 167  Q
    ||||||||||||| |||||  ||||||||||| ||||||| |||||||| |||||||||||    
T  45512843 aacattctcatctccgctatgcttattttattttcgtgttggttcttcaatgtccaacact 45512903  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 9989310 - 9989360
Alignment:
Q  115 catcttcgctacacttattttattctcgtgttagttcttcattgtccaaca 165  Q
    ||||||| |||| ||||||||||| || | |||||||||||||||||||||    
T  9989310 catcttcactacgcttattttattttcattttagttcttcattgtccaaca 9989360  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 41626906 - 41626853
Alignment:
Q  113 ctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacac 166  Q
    ||||||| ||||||||| |||||| |||| |||||||||||||||||| |||||    
T  41626906 ctcatctccgctacactaattttactctcatgttagttcttcattgtcaaacac 41626853  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 2079261 - 2079220
Alignment:
Q  114 tcatcttcgctacacttattttattctcgtgttagttcttca 155  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  2079261 tcatctccgctacgcttattttattctcgtgttagttcttca 2079220  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 20834423 - 20834471
Alignment:
Q  129 ttattttattctcgtgttagttcttcattgtccaacactctacttcata 177  Q
    |||||||||||||||||||| |||||||||  |||||||||| ||||||    
T  20834423 ttattttattctcgtgttagatcttcattgctcaacactctatttcata 20834471  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 12134248 - 12134308
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 167  Q
    |||||||||||||  ||||  |||| ||||||||||||||||||||||  || ||||||||    
T  12134248 aacattctcatctctgctatgcttagtttattctcgtgttagttcttcgctgcccaacact 12134308  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 38904066 - 38904127
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactc 168  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||| || | || |||||||||    
T  38904066 aacattctcatctttgctacacttattttattcttgtgttggttttttactgcccaacactc 38904127  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 29398754 - 29398706
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttcttca 155  Q
    ||||| ||||||| ||||||||||||||||||||| |||| ||||||||    
T  29398754 aacatcctcatctccgctacacttattttattctcatgttggttcttca 29398706  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 40933243 - 40933289
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttctt 153  Q
    ||||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  40933243 aacatcctcatctacgctacacttattttactctcgtgttggttctt 40933289  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 20105825 - 20105878
Alignment:
Q  114 tcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 167  Q
    |||||| ||||||| |||| ||||||| |||||||| ||||| |||||||||||    
T  20105825 tcatctccgctacatttatattattcttgtgttagtccttcactgtccaacact 20105878  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 37393514 - 37393563
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttcttcat 156  Q
    ||||| ||| ||||| |||||||||||||||||||||||| |||||||||    
T  37393514 aacatcctcgtcttctctacacttattttattctcgtgtttgttcttcat 37393563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 28908489 - 28908535
Alignment:
Q  107 aacattctcatcttcgctacacttattttattctcgtgttagttctt 153  Q
    ||||||||||||| |||||||||||||||| ||||||| | ||||||    
T  28908489 aacattctcatctccgctacacttattttactctcgtgctggttctt 28908535  T

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