View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_7 (Length: 621)
Name: NF10466_low_7
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 15 - 602
Target Start/End: Complemental strand, 6186617 - 6186030
Alignment:
| Q |
15 |
gatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatat |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186617 |
gatgaatgcaattattggaattattgctgatgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatat |
6186518 |
T |
|
| Q |
115 |
tcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagactatgggatctgctactactatttgtaccgacaaaacaggta |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6186517 |
tcaatgaagaaaatgatggctgatgaagcaatggtgagaaaactctctgcatgtgagactatgggatctgctactactatttgcaccgacaaaacaggta |
6186418 |
T |
|
| Q |
215 |
ctattgaaaaatacttgattctttaaaagctgttttcaaaagtgattatttattttgtaacaagaatcttacttttgattctgtgatttgtaataggtac |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186417 |
ctattgaaaaaaacttgattctttaaaagctgttttcaaaagtgattatttattttgtaacaagaatcttacttttgattctgtgatttgtaataggtac |
6186318 |
T |
|
| Q |
315 |
acttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaaggaggtgcatattccaatgttgatccatctgttcttcaattg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6186317 |
acttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaagaaggtgcatattccaatgttgatccatctgttcttcaattg |
6186218 |
T |
|
| Q |
415 |
atcaaagaaggagttgctctcaatacaactggtgatgttcacaaatcgaaaacaggttcggattctgaatttgagttttcaggaagtccaacagaaaaag |
514 |
Q |
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| T |
6186217 |
atcaaagaaggagttgctctcaatacaactggtgatgctcacaaatcgaaaacaggttcggattctgaatttgagttttcaggaagtccaacagaaaaag |
6186118 |
T |
|
| Q |
515 |
caatactatcttgggctgttttggagttgaaaatggatatggagcacttgacaaaaagttgttctattattcaagttgagactttcaa |
602 |
Q |
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| T |
6186117 |
caatactatcttgggctgttttggagttgaaaatggatatggagcacttgacaaaaagttgttctattattcaagttgagactttcaa |
6186030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 313 - 602
Target Start/End: Complemental strand, 4237226 - 4236937
Alignment:
| Q |
313 |
acacttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaaggaggtgcatattccaatgttgatccatctgttcttcaat |
412 |
Q |
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||||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||| ||||||||||||| ||||||||||| |
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| T |
4237226 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttagaaccaatggaagttggtacatattcaaatgttgatccatttgttcttcaat |
4237127 |
T |
|
| Q |
413 |
tgatcaaagaaggagttgctctcaatacaactggtgatgttcacaaatcgaaaacaggttcggattctgaatttgagttttcaggaagtccaacagaaaa |
512 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
4237126 |
tgatcaaagaaggagtttctctcaatacaactggtggtgttcacaaattgaaatcaggttctgattctgaatttgagttttctggtagtccaacagaaaa |
4237027 |
T |
|
| Q |
513 |
agcaatactatcttgggctgttttggagttgaaaatggatatggagcacttgacaaaaagttgttctattattcaagttgagactttcaa |
602 |
Q |
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| T |
4237026 |
agcaatactatcttgggctgttttggaattgaaaatggatatggagaacttgacaaaaagttgttctattcttcaagttgagactttcaa |
4236937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 4243561 - 4243357
Alignment:
| Q |
15 |
gatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatat |
114 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||||| || ||| |
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| T |
4243561 |
gatgaatgcagttattggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttat |
4243462 |
T |
|
| Q |
115 |
tcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagactatgggatctgctactactatttgtaccgacaaaacaggta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || || || ||||||| |
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| T |
4243461 |
tcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggta |
4243362 |
T |
|
| Q |
215 |
ctatt |
219 |
Q |
| |
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||||| |
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|
| T |
4243361 |
ctatt |
4243357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 38358195 - 38358065
Alignment:
| Q |
52 |
actattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtga |
151 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||| ||||||||| | || ||||| || || ||||| | ||||||||| ||||| || ||||||| |
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| T |
38358195 |
actattgtggtcgttgccatccctgagggtttgccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtga |
38358096 |
T |
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| Q |
152 |
gaaaactctctgcatgtgagactatgggatc |
182 |
Q |
| |
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| T |
38358095 |
ggaaactttcagcttgtgaaactatgggatc |
38358065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 602
Target Start/End: Complemental strand, 21847841 - 21847788
Alignment:
| Q |
549 |
ggatatggagcacttgacaaaaagttgttctattattcaagttgagactttcaa |
602 |
Q |
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||||||||||||| | |||||| ||| ||||||||||||||||||||||||||| |
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| T |
21847841 |
ggatatggagcacctaacaaaaggttattctattattcaagttgagactttcaa |
21847788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
45 |
tgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattga |
103 |
Q |
| |
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||||||||| |||||||||||||| ||||||| ||||| || |||||||||||||||| |
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| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 39951730 - 39951669
Alignment:
| Q |
71 |
ttcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatg |
132 |
Q |
| |
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|||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||| |
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| T |
39951730 |
ttcccgagggtttaccattagctgtaacattgagtcttgcatttgcaatgaagaaaatgatg |
39951669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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