View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_71 (Length: 250)
Name: NF10466_low_71
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 39664147 - 39664340
Alignment:
| Q |
51 |
ctcaaagttatgtaaattcattaaagatcaaatatagaagaaagaattgtcaaaaaactatcaagacatcatcactatgcaacataaaatatgaatacgt |
150 |
Q |
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| T |
39664147 |
ctcaaagttatgtaaattcattaaaaatcaaatatagaaggaagaattgtcaaaaaactatcaagacatcatcactatgcaacataaaatatgaatccgt |
39664246 |
T |
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| Q |
151 |
tcaatttgtttttctcagaccat-aataacacaagaacagcaaaactctttaacttctagaatgaatagtttaaccatttcaaccttcttctca |
243 |
Q |
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| T |
39664247 |
tcaatttgtttttctcagaccataaataacacaagaacagcaaaactctttaacttctagaatgaatagtttaaccatttcaaccttcttctca |
39664340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39664136 - 39664185
Alignment:
| Q |
1 |
caaacacaaatctcaaagttatgtatattcattaaaaatcaaatatagaa |
50 |
Q |
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| T |
39664136 |
caaacacaattctcaaagttatgtaaattcattaaaaatcaaatatagaa |
39664185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 39653805 - 39653855
Alignment:
| Q |
159 |
tttttctcagaccataataaca-caagaacagcaaaactctttaacttcta |
208 |
Q |
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| T |
39653805 |
tttttctcagaccataataacaccaggaaaagcaaaactatttaacttcta |
39653855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39653292 - 39653337
Alignment:
| Q |
1 |
caaacacaaatctcaaagttatgtatattcattaaaaatcaaatat |
46 |
Q |
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| T |
39653292 |
caaacacaattctcaaagttatttaaattcattaaaattcaaatat |
39653337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 43889608 - 43889552
Alignment:
| Q |
159 |
tttttctcagaccataataacacaa-gaacagcaaaactctttaacttctagaatga |
214 |
Q |
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| T |
43889608 |
tttttctcagaccataataacacaaggagcatcaaaactatttaacttttacaatga |
43889552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 43889796 - 43889756
Alignment:
| Q |
102 |
aaaaaactatcaagacatcatcactatgcaacataaaatat |
142 |
Q |
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| T |
43889796 |
aaaaaattatcaagacatcatcaccatgaaacataaaatat |
43889756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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