View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_73 (Length: 250)
Name: NF10466_low_73
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 31684349 - 31684586
Alignment:
| Q |
1 |
attggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgtt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684349 |
attggttgatgttggaggaggtacagggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgtt |
31684448 |
T |
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| Q |
101 |
gatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaatannnnnnn |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31684449 |
gatggtttgctaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaata-tttttt |
31684547 |
T |
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| Q |
201 |
nnnnnnagggatgttgaaggtaaatgttaaaatattcat |
239 |
Q |
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| T |
31684548 |
tttatgagggatgttgaaggtaaatgttaaaatattcat |
31684586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 31711322 - 31711512
Alignment:
| Q |
1 |
attggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31711322 |
attggttgatgttggaggaggtacggggaccatggcaaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgtt |
31711421 |
T |
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| Q |
101 |
gatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
191 |
Q |
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| T |
31711422 |
gatggcttgcaaggaagtgaaaagctaagatatgttggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaa |
31711512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 31734728 - 31734918
Alignment:
| Q |
1 |
attggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgtt |
100 |
Q |
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||||||||||||||||||||| || ||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
31734728 |
attggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgtt |
31734827 |
T |
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| Q |
101 |
gatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
191 |
Q |
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| T |
31734828 |
gatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
31734918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 31702888 - 31703078
Alignment:
| Q |
1 |
attggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgtt |
100 |
Q |
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|||||||||||||||||| || || |||||||||||||| | ||||| |||||||||||||||||||||| | |||||||||||| |||||||||||| |
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| T |
31702888 |
attggttgatgttggaggtggcacagggaccatggcaaaggcccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgtt |
31702987 |
T |
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| Q |
101 |
gatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
191 |
Q |
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| T |
31702988 |
gatggcttgcaaggtagtgagaatctaaactatgttggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaa |
31703078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 31714291 - 31714481
Alignment:
| Q |
1 |
attggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgtt |
100 |
Q |
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||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||| |
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| T |
31714291 |
attggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactgtgtttgatcttccacatgttgtt |
31714390 |
T |
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| Q |
101 |
gatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
191 |
Q |
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| T |
31714391 |
gatggcttgcaaggaggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctattttgttgaaggtaa |
31714481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 30570360 - 30570458
Alignment:
| Q |
53 |
tcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgttt |
151 |
Q |
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||||||||| | || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||||||| |
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| T |
30570360 |
tcattcccaaacattgagtgcattgtatttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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