View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_74 (Length: 249)
Name: NF10466_low_74
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_74 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12137407 - 12137162
Alignment:
| Q |
1 |
agattcattgtactaaacaaaatatttatcattattcggaaggtttatgaacggataccaatcaga-------ataaccaaaataggccatgttaccatt |
93 |
Q |
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| T |
12137407 |
agattcattgtactaaacaaaatatttatcattattcggaaggtttatgaacggataccaatcagggtaaagcataaccaaaataggccatgttaccatt |
12137308 |
T |
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| Q |
94 |
cctgaaaacaaatcgcttacaatcccacacagaaaagcaaaagtaaggggcagtgactcttgaaatcactaatgagtgggaacaatcttaaattttaagc |
193 |
Q |
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| T |
12137307 |
cctgaaaacaaatcgcttacaatcccacacggaaaagcaaaagtaaggggcagtgactcttgaaatcactaatgagtgggaacaatcttaaattttaagc |
12137208 |
T |
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| Q |
194 |
agagacaaatgaaccacacatcaccatgatttcacctaagattctt |
239 |
Q |
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| T |
12137207 |
agagacaaatgaaccaaacatcaccatgatttcacctaagattctt |
12137162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 34530463 - 34530402
Alignment:
| Q |
167 |
gagtgggaacaatcttaaattttaagcagagacaaatgaaccacacatcaccatgatttcac |
228 |
Q |
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| T |
34530463 |
gagtgggaaaaatcttaaatttcaagcacagacaaatggactcaacatcacaatgatttcac |
34530402 |
T |
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