View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_75 (Length: 249)

Name: NF10466_low_75
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_75
NF10466_low_75
[»] chr1 (10 HSPs)
chr1 (3-229)||(3300058-3300284)
chr1 (1-229)||(43044322-43044550)
chr1 (1-229)||(43067441-43067669)
chr1 (1-229)||(43083166-43083394)
chr1 (1-229)||(43077318-43077546)
chr1 (15-220)||(45984432-45984637)
chr1 (1-229)||(38138590-38138818)
chr1 (1-229)||(7891682-7891910)
chr1 (1-220)||(50911763-50911982)
chr1 (60-213)||(40035442-40035595)
[»] chr4 (3 HSPs)
chr4 (1-226)||(4230787-4231012)
chr4 (24-105)||(19965381-19965462)
chr4 (185-229)||(19965285-19965329)
[»] chr6 (2 HSPs)
chr6 (1-208)||(7520473-7520680)
chr6 (1-208)||(7530010-7530217)
[»] chr8 (4 HSPs)
chr8 (15-229)||(4619025-4619239)
chr8 (28-230)||(4788189-4788391)
chr8 (170-230)||(4296931-4296991)
chr8 (47-119)||(4296808-4296880)
[»] chr5 (1 HSPs)
chr5 (24-220)||(16348492-16348688)
[»] chr2 (4 HSPs)
chr2 (24-216)||(33860179-33860371)
chr2 (165-220)||(34690326-34690381)
chr2 (165-220)||(34712738-34712793)
chr2 (1-116)||(16231503-16231618)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 3300058 - 3300284
Alignment:
Q  3 tgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300058 tgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcat 3300157  T
Q  103 caccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300158 caccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggt 3300257  T
Q  203 gtggcagtcaagaacaggggcatagcc 229  Q
    |||||||||||||||||||||||||||    
T  3300258 gtggcagtcaagaacaggggcatagcc 3300284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43044322 - 43044550
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43044322 tttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 43044421  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43044422 atcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaacttgacagcaatgtgggag 43044521  T
Q  201 gtgtggcagtcaagaacaggggcatagcc 229  Q
    |||||||||||||||||||||||||||||    
T  43044522 gtgtggcagtcaagaacaggggcatagcc 43044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43067669 - 43067441
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43067669 tttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 43067570  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43067569 atcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaacttgacagcaatgtgggag 43067470  T
Q  201 gtgtggcagtcaagaacaggggcatagcc 229  Q
    |||||||||||||||||||||||||||||    
T  43067469 gtgtggcagtcaagaacaggggcatagcc 43067441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43083166 - 43083394
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || || ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43083166 tttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 43083265  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43083266 atcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaacttgacagcaatgtgggag 43083365  T
Q  201 gtgtggcagtcaagaacaggggcatagcc 229  Q
    |||||||||||||||||||||||||||||    
T  43083366 gtgtggcagtcaagaacaggggcatagcc 43083394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43077546 - 43077318
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||| | ||||||| ||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43077546 tttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 43077447  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    |||||| ||| ||| ||||||||||| | |||||||| || | ||||||||||| |||||||| |||||||||||| |||| ||||||  ||||||| ||    
T  43077446 atcaccattcatcaggaatttgggcttcgtctcaatcaccataccagaacgcctatcaatcttggtaacaagctcatcaaacttgacaagaatgtggaag 43077347  T
Q  201 gtgtggcagtcaagaacaggggcatagcc 229  Q
    |||||||||| ||||||||| ||||||||    
T  43077346 gtgtggcagtgaagaacaggtgcatagcc 43077318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 45984637 - 45984432
Alignment:
Q  15 ctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttca 114  Q
    |||||| | |||||||| |||||||||||   |||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||  || |||    
T  45984637 ctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtgggaatcatcttaataataccagtatcaccactcatca 45984538  T
Q  115 agaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaag 214  Q
    | |||||||||||| ||||||| ||||  ||||||| |||||||| ||| | || |||||||||||| ||||||||||||||||||||||||||||||||    
T  45984537 aaaatttgggctccctctcaatttcctcaccagaacacctgtcaaccttggaaataagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaag 45984438  T
Q  215 aacagg 220  Q
    ||||||    
T  45984437 aacagg 45984432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38138818 - 38138590
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || |||||||| ||||||||||||||||||||   ||| |||  ||| |||||||||| |||||||||||||||||||| || ||||||    
T  38138818 tttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtgggaatcatcttaacaacaccagc 38138719  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    |||||| |||||||||||||||||||||||||| || |||   ||||||  |||||||| ||| |||||||||| |||||| ||||||| || |||||||    
T  38138718 atcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacctgtcaaacttggtaacaagcttagcaaacttgacaggaacgtgggag 38138619  T
Q  201 gtgtggcagtcaagaacaggggcatagcc 229  Q
    ||||||||||| |||| ||| | ||||||    
T  38138618 gtgtggcagtccagaataggtgtatagcc 38138590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 7891910 - 7891682
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || |||||||| ||||| ||||||| ||||||  |||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7891910 tttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtctctaccaccatgggcttggtgggaatcatcttaataataccagc 7891811  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    ||| || ||||||||||||||||||||||||||||  ||      || |  |||||||| |||  |||||||||  ||||| ||||||||||||||||||    
T  7891810 atcgccattcttcaagaatttgggctccttctcaaattcaacattagtattcctgtcaaacttgctaacaagcttggcaaacttgacagcaatgtgggag 7891711  T
Q  201 gtgtggcagtcaagaacaggggcatagcc 229  Q
    ||||||||||| |||| ||| | ||||||    
T  7891710 gtgtggcagtcgagaataggtgtatagcc 7891682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 50911763 - 50911982
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || |||||||| |||||||| |||| |||| | |  || |||||||| |||| ||||||||||||||||||||||| ||||| ||||||    
T  50911763 tttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtgggaatcatctcaataacaccagc 50911862  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
     ||||| ||||||||||||||||||||||||||||| |||     | || ||||  || |||| |||||||||| |||||| ||||||||||||| |||     
T  50911863 gtcaccattcttcaagaatttgggctccttctcaatttccacaaaataatgcctaacattcttggtaacaagcttagcaaacttgacagcaatgttggac 50911962  T
Q  201 gtgtggcagtcaagaacagg 220  Q
    |||||||| | |||||||||    
T  50911963 gtgtggcaatgaagaacagg 50911982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 40035595 - 40035442
Alignment:
Q  60 accaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaa 159  Q
    ||||||||||||||||| |||||||| | || ||  ||  ||||||| |||| ||||||||||||||||| ||||| | |      | ||||||||||||    
T  40035595 accaccatgggcttggttggaatcatttcaacaagccccccatcaccattctccaagaatttgggctcctgctcaagcacaaaattacaacgcctgtcaa 40035496  T
Q  160 tcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaa 213  Q
     |||  |||||| |  ||| ||  |||||| |||||||||||||||||||||||    
T  40035495 gcttgttaacaaacctagcgaacctgacaggaatgtgggaggtgtggcagtcaa 40035442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 4230787 - 4231012
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4230787 tttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 4230886  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    ||| || ||||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  4230887 atctccattcttcaggaatttaggctccttctcgatctccttaccagaacgcctgtcaatcttagtaacaagctcagcaaacttgactgcaatgtgggag 4230986  T
Q  201 gtgtggcagtcaagaacaggggcata 226  Q
    ||||||||||||||||||||||||||    
T  4230987 gtgtggcagtcaagaacaggggcata 4231012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 19965462 - 19965381
Alignment:
Q  24 aaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcac 105  Q
    |||| ||| ||||||||||| | |||||||| ||| |||||||| ||||||| |||||||||||||| || | |||||||||    
T  19965462 aaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaatcatcttaacaacagcagcatcac 19965381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 19965329 - 19965285
Alignment:
Q  185 gacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcc 229  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  19965329 gacagcaatgtgggaggtgtggcagtcaagaacaggtgtatagcc 19965285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7520680 - 7520473
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| |||||||| || ||||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  7520680 tttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtctcaaccaccatgggcttggtgggaaccatcttaatgataccagc 7520581  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||    
T  7520580 atcaccgttcttcaagaacttgggctccttctcaatctccttaccagatcgcctgtcaatcttggtaacaagttcagcaaacttcacagcaatgtgagag 7520481  T
Q  201 gtgtggca 208  Q
    ||||||||    
T  7520480 gtgtggca 7520473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7530217 - 7530010
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| ||||||||||| ||||| ||||| |||||||| ||||  || |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  7530217 tttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtctcaaccaccatgggcttggtgggaaccatcttaatgataccagc 7530118  T
Q  101 atcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggag 200  Q
    |||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||    
T  7530117 atcaccattcttcaagaacttgggctccttctcaatctccttaccagatcgcctgtcaatcttggtaacaagttcagcaaacttcacagcaatgtgagag 7530018  T
Q  201 gtgtggca 208  Q
    ||||||||    
T  7530017 gtgtggca 7530010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 4619025 - 4619239
Alignment:
Q  15 ctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttca 114  Q
    |||||||| |||||||| |||| |||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  4619025 ctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttca 4619124  T
Q  115 agaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaag 214  Q
     |||||||||||| ||||||||  |||| ||||||| |||||||||||| |  | ||||| | |||| ||||||||| |||||||||||||||| | |||    
T  4619125 ggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaag 4619224  T
Q  215 aacaggggcatagcc 229  Q
    |||||| | ||||||    
T  4619225 aacaggtgtatagcc 4619239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 4788391 - 4788189
Alignment:
Q  28 ggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctc 127  Q
    ||||||||||||||||   | |||||| ||| |||||||| ||||||||||||| ||||| ||||| |||| ||||||| ||||||||||||   |||      
T  4788391 ggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatctcaataagaccatcatcaccattcttcaagaatgcaggcct 4788292  T
Q  128 cttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatag 227  Q
    || ||||||  |||  |||||| |  |||||| |||   || ||||||| |||||| ||||||||| |||||||||||||||| ||||| ||| | ||||    
T  4788291 ctcctcaattacctaaccagaatgattgtcaaccttgcaaataagctcatcaaattcgacagcaatttgggaggtgtggcagtgaagaataggcgtatag 4788192  T
Q  228 cct 230  Q
    |||    
T  4788191 cct 4788189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 4296931 - 4296991
Alignment:
Q  170 aagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcct 230  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||| | |||||||    
T  4296931 aagctcagcaaatttgacaggaatgtgggaggtgtggcagtgaagaataggtgtatagcct 4296991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 4296808 - 4296880
Alignment:
Q  47 agagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaat 119  Q
    |||||||| ||| |||||||| | || |||||||||||||||||||| || |   ||||| ||||||||||||    
T  4296808 agagaaaggctctaccaccatagactcggtgggaatcatcttaataagacaattgtcaccattcttcaagaat 4296880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 16348492 - 16348688
Alignment:
Q  24 aaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgg 123  Q
    |||||||| |||| |||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||    
T  16348492 aaacggccgagtgaaggatattcagaaaaagtctctaccaccatgggcttggtgggaatcatctgaataatgccaccatcacctttcttcaagaatttgg 16348591  T
Q  124 gctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 220  Q
    |||||||| ||||   ||| ||||||  |||||| | ||| | || ||||| |||||| ||||||||||||| |||||||||||||| |||||||||    
T  16348592 gctccttcacaattatcttgccagaaaacctgtctaccttggcaagaagcttagcaaacttgacagcaatgtaggaggtgtggcagttaagaacagg 16348688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 33860179 - 33860371
Alignment:
Q  24 aaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgg 123  Q
    |||||||| ||||||||||| | || ||||  ||| |||||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |    
T  33860179 aaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcag 33860278  T
Q  124 gctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaa 216  Q
    ||||||||||||| ||||| ||| ||  || ||||| ||| | || ||||||| ||||  ||||||||| |||||||||||||||||||||||    
T  33860279 gctccttctcaatttccttaccataaaaccagtcaaccttggcaataagctcaacaaacatgacagcaacgtgggaggtgtggcagtcaagaa 33860371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 34690326 - 34690381
Alignment:
Q  165 gtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 220  Q
    |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |||||    
T  34690326 gtaacaagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacagg 34690381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 34712738 - 34712793
Alignment:
Q  165 gtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 220  Q
    |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |||||    
T  34712738 gtaacaagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacagg 34712793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 16231503 - 16231618
Alignment:
Q  1 tttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagc 100  Q
    |||||||||| || |||||||| ||||| ||||| | |||||| |||  || |  ||| |||||||| |||||  | ||||||||||||| ||| || ||    
T  16231503 tttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaatcatcttaacaattcctgc 16231602  T
Q  101 atcaccgttcttcaag 116  Q
    |||||| |||||||||    
T  16231603 atcaccattcttcaag 16231618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University