View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_76 (Length: 249)

Name: NF10466_low_76
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_76
NF10466_low_76
[»] chr8 (2 HSPs)
chr8 (94-224)||(26041686-26041817)
chr8 (1-55)||(26041632-26041686)
[»] chr2 (1 HSPs)
chr2 (197-227)||(36870132-36870162)
[»] chr7 (1 HSPs)
chr7 (198-227)||(44643655-44643684)
[»] chr5 (1 HSPs)
chr5 (198-227)||(35683655-35683684)
[»] scaffold0059 (1 HSPs)
scaffold0059 (197-229)||(17671-17703)
[»] chr3 (1 HSPs)
chr3 (195-227)||(44400585-44400617)
[»] chr1 (3 HSPs)
chr1 (195-227)||(5584382-5584414)
chr1 (198-230)||(37649795-37649827)
chr1 (195-227)||(45565365-45565397)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 26041686 - 26041817
Alignment:
Q  94 agaaacacatgaattgagtggttgagagagaaacatgaaatttccgagaagaattacaatggaaac-gggtgagaaaaatattgtaggacatttcagttg 192  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  26041686 agaaacacaggaattgagtggttgagagagaaacgtgaaatttccgagaagaattacaatggaaactgggtgagaaaaatattgtaggacatttccgttg 26041785  T
Q  193 agccctaaggctttgtttgcgagtttgaaggg 224  Q
    ||||||||||||||||||||||||||||||||    
T  26041786 agccctaaggctttgtttgcgagtttgaaggg 26041817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26041632 - 26041686
Alignment:
Q  1 gagaaccccagcaatcaattgaagggggagctcatgaaaataacaggggaaccca 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26041632 gagaaccccagcaatcaatcgaagggggagctcatgaaaataacaggggaaccca 26041686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 36870132 - 36870162
Alignment:
Q  197 ctaaggctttgtttgcgagtttgaaggggaa 227  Q
    |||||||||||||||||||||||||||||||    
T  36870132 ctaaggctttgtttgcgagtttgaaggggaa 36870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 44643655 - 44643684
Alignment:
Q  198 taaggctttgtttgcgagtttgaaggggaa 227  Q
    ||||||||||||||||||||||||||||||    
T  44643655 taaggctttgtttgcgagtttgaaggggaa 44643684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 35683684 - 35683655
Alignment:
Q  198 taaggctttgtttgcgagtttgaaggggaa 227  Q
    ||||||||||||||||||||||||||||||    
T  35683684 taaggctttgtttgcgagtttgaaggggaa 35683655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 17703 - 17671
Alignment:
Q  197 ctaaggctttgtttgcgagtttgaaggggaatg 229  Q
    ||||||||||||||||||||||| |||||||||    
T  17703 ctaaggctttgtttgcgagtttggaggggaatg 17671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 44400585 - 44400617
Alignment:
Q  195 ccctaaggctttgtttgcgagtttgaaggggaa 227  Q
    ||||||||||||||||||||||||| |||||||    
T  44400585 ccctaaggctttgtttgcgagtttggaggggaa 44400617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 5584382 - 5584414
Alignment:
Q  195 ccctaaggctttgtttgcgagtttgaaggggaa 227  Q
    ||||||||||||||||||||||||| |||||||    
T  5584382 ccctaaggctttgtttgcgagtttggaggggaa 5584414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 37649827 - 37649795
Alignment:
Q  198 taaggctttgtttgcgagtttgaaggggaatgg 230  Q
    |||||||||||||||||||||| ||||||||||    
T  37649827 taaggctttgtttgcgagtttggaggggaatgg 37649795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 45565397 - 45565365
Alignment:
Q  195 ccctaaggctttgtttgcgagtttgaaggggaa 227  Q
    ||||||||||||||||||||||||| |||||||    
T  45565397 ccctaaggctttgtttgcgagtttggaggggaa 45565365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University