View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_78 (Length: 247)
Name: NF10466_low_78
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_78 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold1652 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 37245379 - 37245157
Alignment:
| Q |
25 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcctcttcctg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245379 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcctcttcctg |
37245280 |
T |
|
| Q |
125 |
gtgctccatctccttcaccgttcgccgtcaactcaccagcatctcctcctcccgctgccgctcctgattctccagctgccgctgcttctcccgttgccgc |
224 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37245279 |
gtgcttcatctccttcaccgttcgccatcaactcaccagcatctgctcctcccgctgccgctcctggttctccagctgccgctgcttctcccgttgccgc |
37245180 |
T |
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| Q |
225 |
tcctgctgtgactccatcgtcga |
247 |
Q |
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||||||||||||||||||||||| |
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| T |
37245179 |
tcctgctgtgactccatcgtcga |
37245157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 37242248 - 37242199
Alignment:
| Q |
127 |
gctccatctccttcaccgttcgccgtcaactcaccagcatctcctcctcc |
176 |
Q |
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| T |
37242248 |
gctccatctccttcaccgttcgcagttaactatccaacatctcctcctcc |
37242199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 40 - 121
Alignment:
| Q |
35 |
caccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
116 |
Q |
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| T |
40 |
caccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 402 - 439
Alignment:
| Q |
79 |
atttctccctccgctaactcaccagtggcatctgctcc |
116 |
Q |
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||||||||||||||||||||| | |||||||||||||| |
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| T |
402 |
atttctccctccgctaactcaacggtggcatctgctcc |
439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 338 - 366
Alignment:
| Q |
219 |
tgccgctcctgctgtgactccatcgtcga |
247 |
Q |
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| T |
338 |
tgccgctcctgctgtgactccatcgtcga |
366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 165066 - 165154
Alignment:
| Q |
25 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
116 |
Q |
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| T |
165066 |
gctcgatcaccaccatcatc--ccccca-gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctcc |
165154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 14248660 - 14248572
Alignment:
| Q |
25 |
gctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
116 |
Q |
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|||||||||||||||||||| | |||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
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| T |
14248660 |
gctcgatcaccaccatcatc--ccccca-gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctcc |
14248572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 3762 - 3688
Alignment:
| Q |
42 |
atcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactcaccagtggcatctgctcc |
116 |
Q |
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| T |
3762 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
3688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 1256 - 1320
Alignment:
| Q |
35 |
caccatcatcatcgcccatgttttctccgtttccatcacctataatttctccctccgctaactca |
99 |
Q |
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|||||||| |||| |||| || ||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
1256 |
caccatcaacatcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
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