View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_80 (Length: 242)
Name: NF10466_low_80
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_80 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 39663733 - 39663956
Alignment:
| Q |
19 |
gagacactatgaaaggaggtgatgttcaaggggatgaattgtcagttacctttccatttagcaagaacaatgttgttaaaccattaatgtaaaaaccatt |
118 |
Q |
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| T |
39663733 |
gagacaccatgaaaggaggtgatgttcaaggggatgaattgtcagttacctttccatttagcaagaacaatgttgttaaaccattaatgtaaaaaccatt |
39663832 |
T |
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| Q |
119 |
ttttctacttccaagttgttttataggaacatataaaatttaaggagaaacacttaaattatagttttgggtgaacataagataagattgttttcagagt |
218 |
Q |
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| T |
39663833 |
ttttctacttccaagttgttttataggaacatagaaaattttaggagaaacacttaaattatagttttgggtgaacataagataagattgttttcagtgt |
39663932 |
T |
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| Q |
219 |
tctaacatatataacacaaacacc |
242 |
Q |
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| T |
39663933 |
tctaacatatataacacaaacacc |
39663956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 40100503 - 40100562
Alignment:
| Q |
183 |
ttttgggtgaacataagataagattgttttcagagttctaacatatataacacaaacacc |
242 |
Q |
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| T |
40100503 |
ttttggatgaacataagataagattgttttcagagttctaacatatataacacgaacacc |
40100562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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