View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_84 (Length: 240)
Name: NF10466_low_84
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 4946675 - 4946450
Alignment:
| Q |
14 |
agataggggacataatttgcatcatcttcagtttctttcctaaaaattcgattcgatttgatgtggtatgcactgaaaaagtgaa--------gagnnnn |
105 |
Q |
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| T |
4946675 |
agataggggacataatttgcatcatcttcagtttctttcctaaaaattcgattcgatttgatgtggtatgcactggaaaagtgaaaaaaaaaagaaaaac |
4946576 |
T |
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| Q |
106 |
nnnnttaatcagttgaaatctaacatgttagaagaccaaagaaaaccctaaaagaaaaagcagattaagagttaaataggataccttgaagattgaagaa |
205 |
Q |
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| T |
4946575 |
aaaattaaacagttgaaatctaacatgttagaagacgaaagaaaaccctaaaagaaaaagcagattaagagttaaataggataccttgaagattgaagaa |
4946476 |
T |
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| Q |
206 |
aataaattagaagagaaagttgatga |
231 |
Q |
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| T |
4946475 |
aataaattagaagagaaagtggatga |
4946450 |
T |
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