View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_85 (Length: 240)
Name: NF10466_low_85
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_85 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28524994 - 28525219
Alignment:
| Q |
1 |
taaacgagtttgttaatgatttagagattgatttaaaaaatgtcactaaaccaatagttgctaatgttagcgaacggtttgacattttcggtctctaaat |
100 |
Q |
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| T |
28524994 |
taaacgagtttgttaatgatttagagaccgatttaaaaaatgtcactaaaccaatagttgctaatgttagcgaacggtttgacattttcggtctctaaat |
28525093 |
T |
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| Q |
101 |
tggtcactgnnnnnnn-agctaagtgatgtgtttttcatacaatataagcaaaaactggtaaagaaaagtagtctatagaagttttgaaatggaatacta |
199 |
Q |
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| T |
28525094 |
tggtcactgtttttcttagctaagtgatgtgtttttcatacaatataagcaaaaactggtaaagaaaagtagtctatagaagttttgaaatggaatacta |
28525193 |
T |
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| Q |
200 |
tactttttcctattttatttttgttg |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28525194 |
tactttttcctattttatttttgttg |
28525219 |
T |
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Back To:
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 5822559 - 5822634
Alignment:
| Q |
30 |
gatttaaaaaatgtcactaaaccaatagttgctaatgttagcgaacggtttgacattttcggtctctaaattggtc |
105 |
Q |
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| T |
5822559 |
gatttgaaaaatgtcgctaaactactggttgctaatactagcgactggtttgacattttcggtctttaaatcggtc |
5822634 |
T |
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