View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_86 (Length: 240)
Name: NF10466_low_86
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_86 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 15076627 - 15076417
Alignment:
| Q |
1 |
gcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaacaatggtaaatgtaagtgctctcaaccaagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| || |
|
|
| T |
15076627 |
gcactagttcatgtataatggatttaagtaatggatgattctcaaaagagtattgattgcgattaacaattgtaaatgtaaatgctctcaaccaagtggt |
15076528 |
T |
|
| Q |
101 |
acctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaa |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076527 |
gcctgattttggtaagctagcaacaacaatatcattgtgtttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaa |
15076428 |
T |
|
| Q |
201 |
aaacattgaaa |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
15076427 |
aaacattgaaa |
15076417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15169048 - 15169270
Alignment:
| Q |
1 |
gcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaacaatggtaaatgtaagtgctctcaaccaagttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
15169048 |
gcactagtttatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagtggt |
15169147 |
T |
|
| Q |
101 |
acctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15169148 |
gcctgattttggtaagcttgcaacaacaatatcactatctttggcttgaaaatgattttgaaaagagattataggttggatcaaatttgatggacaccaa |
15169247 |
T |
|
| Q |
201 |
aaacattgaaacaaatataaattttg |
226 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
15169248 |
aaacattga---aaatataaattttg |
15169270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 15171886 - 15172079
Alignment:
| Q |
1 |
gcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaacaatggtaaatgtaagtgctctcaaccaagttgt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15171886 |
gcactagtttatgtataatggatttaagtaatgaatgattctcaaaagagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagttgt |
15171985 |
T |
|
| Q |
101 |
acctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaa |
200 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171986 |
gcctgattttgg-----------------tatcattgtgtttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaa |
15172068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 4506776 - 4507004
Alignment:
| Q |
1 |
gcactagttcatgtataatggatttaagtaatggatgattctcaaagga---gtattgattgcgattaacaatggtaaatgtaagtgctctcaaccaagt |
97 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||| || ||||| | | |||| ||||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
4506776 |
gcactagttcatgtgaattgaatttaagtaatggatgatcttctaaggaagagaaatgatgacgattaacaatggcaaatgtgagtgctttcaaccaagt |
4506875 |
T |
|
| Q |
98 |
tgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacac |
197 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
4506876 |
tgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtttataggttggattaaatttgatggacac |
4506975 |
T |
|
| Q |
198 |
caaaaacattgaaacaaatataaattttg |
226 |
Q |
| |
|
||||||| |||||| ||||| ||| |||| |
|
|
| T |
4506976 |
caaaaaccttgaaaaaaataaaaaatttg |
4507004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 15164456 - 15164349
Alignment:
| Q |
120 |
gcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaacattgaaacaaatata |
219 |
Q |
| |
|
|||||||||| | |||||||||| ||||| |||| ||||||| |||| ||||||||||||| | ||||||| ||||||||||| |||||| | ||||| |
|
|
| T |
15164456 |
gcaacaacaacagcattgtctttagcttgaaaatcattttgaacagagtttataggttggattaaatttgatcaacaccaaaaaccttgaaaaagatata |
15164357 |
T |
|
| Q |
220 |
aattttga |
227 |
Q |
| |
|
||| |||| |
|
|
| T |
15164356 |
aatattga |
15164349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 13033225 - 13033142
Alignment:
| Q |
119 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || || || |||||||||| | | | || |||||| | || ||||||||||||||| |
|
|
| T |
13033225 |
tgcaacaacaatatcattgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaa |
13033142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 15066556 - 15066473
Alignment:
| Q |
119 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
202 |
Q |
| |
|
|||||| ||||||||| | |||||||| || ||||| |||||||||||| | | || |||||| | | |||||||||||||||| |
|
|
| T |
15066556 |
tgcaactacaatatcactatctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaa |
15066473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 15214887 - 15214970
Alignment:
| Q |
119 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
202 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||| |||||||||||| | | || ||| || | | |||||||||||||||| |
|
|
| T |
15214887 |
tgcaacaacaatatcactgtctttagcatgaaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaa |
15214970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 14999981 - 14999896
Alignment:
| Q |
119 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaac |
204 |
Q |
| |
|
|||||||| || |||| | ||||||| ||| ||||| ||| |||||||| ||||||||||||| | ||| |||||||||||||| |
|
|
| T |
14999981 |
tgcaacaataacatcactatctttggtttgaaaattatttcgaaaagagtttataggttggattaatattggtggacaccaaaaac |
14999896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University