View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_88 (Length: 239)
Name: NF10466_low_88
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31684138 - 31683915
Alignment:
| Q |
1 |
actggactgagtatcccgttcacatttggtaccacactcattggactgtccttaagtagtaatagagatacatcagttaacatgtactcaatctctagct |
100 |
Q |
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| T |
31684138 |
actggactgagtatcccgttcacatttggtaccacactcattggactgtccttaagtagtcatagagatacatcagttaacatgtactcaatctctagct |
31684039 |
T |
|
| Q |
101 |
cattctcagtaatattttgttgagagaagatgccggaatacgtcatgattcgcatcaagcgatggaagtagcaagtttttgtagggttgattggaagtga |
200 |
Q |
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| T |
31684038 |
cattctcagtaatattttgttgagagaagatgccagaatacgtcatgattcgtatcaagcgatggaagtagcaagtttttgtagggttgattggaagtga |
31683939 |
T |
|
| Q |
201 |
actaatgagttttgagagtgacat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
31683938 |
actaatgagttttgagagtgacat |
31683915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 217
Target Start/End: Complemental strand, 31734485 - 31734301
Alignment:
| Q |
33 |
cacactcattggactgtccttaagtagtaatagagatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatg |
132 |
Q |
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| T |
31734485 |
cacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggctcattcgccgcaatattttgttgagagaagaag |
31734386 |
T |
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| Q |
133 |
ccggaatacgtcatgattcgcatcaagcgatggaagtagcaagtttttgtagggttgattggaagtgaactaatgagttttgaga |
217 |
Q |
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| T |
31734385 |
ccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggattggtagtgaagaaatgagttttgaga |
31734301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 31711085 - 31710948
Alignment:
| Q |
27 |
tggtaccacactcattggactgtccttaagtagtaatagagatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagag |
126 |
Q |
| |
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|||| |||||||||||||| ||||||| |||| || | |||| ||||||||||||| |||||||| |||||||||||| | ||| |||| ||||||| |
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| T |
31711085 |
tggtgccacactcattggattgtccttgagtaatagtttagatgcatcagttaacatatactcaatttctagctcattccctataacgtttttttgagag |
31710986 |
T |
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| Q |
127 |
aagatgccggaatacgtcatgattcgcatcaagcgatg |
164 |
Q |
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| T |
31710985 |
aagaagccggagtgagtcatgattcgcatcaagcgatg |
31710948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 31702641 - 31702457
Alignment:
| Q |
37 |
ctcattggactgtccttaagtagtaatagagatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatgccgg |
136 |
Q |
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||||| ||| |||||||||||| ||||| ||| |||| |||||||| ||||| || |||||||||||||| |||| ||| | ||||||||||| | | |
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| T |
31702641 |
ctcatcggattgtccttaagtaataatatcgatgcatcggttaacatatactcgatttctagctcattctcggtaacattatattgagagaagaaactag |
31702542 |
T |
|
| Q |
137 |
aatacgtcatgattcgcatcaagcgatggaagtagcaagtttttgtagggttgattggaagtgaactaatgagttttgagagtga |
221 |
Q |
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||| ||||| ||||||||||||||||| | | |||| ||||||| ||||| |||||| || || ||| |||||||||||||| |
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| T |
31702541 |
aatgagtcattattcgcatcaagcgatgaatgaagcatgtttttgaagggtggattggtagcaaagaaataagttttgagagtga |
31702457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 31714016 - 31713885
Alignment:
| Q |
94 |
tctagctcattctcagtaatattttgttgagagaagatgccggaatacgtcatgattcgcatcaagcgatggaagtagcaagtttttgtagggttgattg |
193 |
Q |
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||||||||||||||||||| || |||| | |||||| ||| || | ||||||||| |||| ||||||| || | || | |||||| ||||| ||||| |
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| T |
31714016 |
tctagctcattctcagtaacatcgtgttcatagaagaagccagattgagtcatgatttgcattaagcgatagatgcaggatttttttgaagggtggattg |
31713917 |
T |
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| Q |
194 |
gaagtgaactaatgagttttgagagtgacatg |
225 |
Q |
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| T |
31713916 |
gtagtgaagaaatgagttttgaaagtggcatg |
31713885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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