View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_90 (Length: 237)
Name: NF10466_low_90
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_90 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9143336 - 9143115
Alignment:
| Q |
1 |
tcccatcaaaaaatctcaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9143336 |
tcccatcaaaaaatcccaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
9143237 |
T |
|
| Q |
101 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcgaaatctccatacacacaatctactgtaagctttctctctataataagatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9143236 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcgaattctccatacacacaatctactgtaagctttctctctataataagatg |
9143137 |
T |
|
| Q |
201 |
ttaatttaatttccctgcttat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
9143136 |
ttaatttaatttccctgcttat |
9143115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17053779 - 17054000
Alignment:
| Q |
1 |
tcccatcaaaaaatctcaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
100 |
Q |
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|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17053779 |
tcccatcaaaaaatttcaaaatcagtttcgtctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
17053878 |
T |
|
| Q |
101 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcgaaatctccatacacacaatctactgtaagctttctctctataataagatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17053879 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagtttgaattctccatacacacaatctactgtaagctttctctctataataagatg |
17053978 |
T |
|
| Q |
201 |
ttaatttaatttccctgcttat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
17053979 |
ttaatttaatttccctgcttat |
17054000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 3063549 - 3063630
Alignment:
| Q |
34 |
ttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatccccaaattagtttgtt |
115 |
Q |
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||||||||||||||| || ||||||||| ||||| |||| ||||||||| |||||| | |||||| |||||||||||||| |
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| T |
3063549 |
ttcttccccaaagtcgtgtctttcttcaaaaaacctaatcccatctttctagcctaaaacttaatccacaaattagtttgtt |
3063630 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6890 - 7111
Alignment:
| Q |
1 |
tcccatcaaaaaatctcaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6890 |
tcccatcaaaaaatcccaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccttaatcc |
6989 |
T |
|
| Q |
101 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcgaaatctccatacacacaatctactgtaagctttctctctataataagatg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6990 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcacttcgaattctccatacacacaatctactgtaagctttctctctataataagata |
7089 |
T |
|
| Q |
201 |
ttaatttaatttccctgcttat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
7090 |
ttaatttaatttccctgcttat |
7111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30015194 - 30014955
Alignment:
| Q |
1 |
tcccatcaaaaaatctcaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30015194 |
tcccatcaaaaaaccccaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaatcgcatctttcttccctaaaccctaatcc |
30015095 |
T |
|
| Q |
101 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcga------------------aatctccatacacacaatctactgtaagctt |
182 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||| |
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| T |
30015094 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcgaattcgccgcaccaatttgattcgccatacacacaatctattgtaagctt |
30014995 |
T |
|
| Q |
183 |
tctctctataataagatgttaatttaatttccctgcttat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
30014994 |
tctctctataataagatgttaatttaatttccctgcttat |
30014955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30074291 - 30074052
Alignment:
| Q |
1 |
tcccatcaaaaaatctcaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30074291 |
tcccatcaaaaaaccccaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaatcgcatctttcttccctaaaccctaatcc |
30074192 |
T |
|
| Q |
101 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaatcagttcga------------------aatctccatacacacaatctactgtaagctt |
182 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
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|
| T |
30074191 |
ccaaattagtttgttaccatcctctgctgtaagctttctcaatcagttcgaattcgccgcaccagttcgattcgccatacacacaatctactgtaagctt |
30074092 |
T |
|
| Q |
183 |
tctctctataataagatgttaatttaatttccctgcttat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
30074091 |
tctctctataataagatgttaatttaatttccctgcttat |
30074052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12777538 - 12777298
Alignment:
| Q |
1 |
tcccatcaaaaaatctcaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaattgcatctttcttccctaaaccctaatcc |
100 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
12777538 |
tcccatcataaaaccccaaaatcagtttcatctttcttccccaaagtcatggctttcttcagaaaacttaatcacatctttcttccctaaaccctaatcc |
12777439 |
T |
|
| Q |
101 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaat-------------------cagttcgaaatctccatacacacaatctactgtaagct |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |
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|
| T |
12777438 |
ccaaattagtttgttaccatcctctgttgtaagctttctcaattagttcgaattcgctgcaccagttcgaattcgccatacacacaatctactgtaagct |
12777339 |
T |
|
| Q |
182 |
ttctctctataataagatgttaatttaatttccctgcttat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12777338 |
ttctctctataataagatgttaatttaatttccctgcttat |
12777298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 30777921 - 30777967
Alignment:
| Q |
79 |
tttcttccctaaaccctaatccccaaattagtttgttaccatcctct |
125 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||||| |
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|
| T |
30777921 |
tttcttccctaaaacataatccccaaatttatttgttaccatcctct |
30777967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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