View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_91 (Length: 237)
Name: NF10466_low_91
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_91 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3299780 - 3300017
Alignment:
| Q |
1 |
gaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299780 |
gaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaatccgaaaaacaagttaaca |
3299879 |
T |
|
| Q |
101 |
agacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcacttcttcttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299880 |
agacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcacttcttcttca |
3299979 |
T |
|
| Q |
201 |
atgctgactttg-ttttattaagtcctccgctgggatc |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3299980 |
atgctgactttgtttttattaagtcctccgctgggatc |
3300017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 43067938 - 43067708
Alignment:
| Q |
10 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| |||| | || |
|
|
| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaa |
43067839 |
T |
|
| Q |
110 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcctgcacggttcacttcttcttcaatgctg |
206 |
Q |
| |
|
||| || ||||| | | ||||||| ||||||| || || ||| ||||| | |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
43067838 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtagatagatcatcctgctcggttcacttcttcttcaatgctg |
43067739 |
T |
|
| Q |
207 |
actttgttttattaagtcctccgctgggatc |
237 |
Q |
| |
|
|||| || | ||||||||||| |||||||| |
|
|
| T |
43067738 |
acttggtctgcttaagtcctccactgggatc |
43067708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 43082897 - 43083127
Alignment:
| Q |
10 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| |||||| || |
|
|
| T |
43082897 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagacgagaa |
43082996 |
T |
|
| Q |
110 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcctgcacggttcacttcttcttcaatgctg |
206 |
Q |
| |
|
||| || ||||| | | ||||||| ||||||| || || ||| ||||| | |||||| | |||||| | |||||||||||||||||||||| |
|
|
| T |
43082997 |
atagaaatactaaggacccaagaccatttattgtaataactatgatatgcttcccaagtagatagaccatcctgctcagttcacttcttcttcaatgctg |
43083096 |
T |
|
| Q |
207 |
actttgttttattaagtcctccgctgggatc |
237 |
Q |
| |
|
|||| || | ||||||||||| |||||||| |
|
|
| T |
43083097 |
acttggtctgcttaagtcctccactgggatc |
43083127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 43044053 - 43044283
Alignment:
| Q |
10 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||| || || |
|
|
| T |
43044053 |
ctgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaa |
43044152 |
T |
|
| Q |
110 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcctgcacggttcacttcttcttcaatgctg |
206 |
Q |
| |
|
||| || ||||| | | ||||||| ||||||| || || ||| ||||| | ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
43044153 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtaaatagatcatcctgctcggttcacttcttcttcaatgctg |
43044252 |
T |
|
| Q |
207 |
actttgttttattaagtcctccgctgggatc |
237 |
Q |
| |
|
|||| || | ||||||||||| |||||||| |
|
|
| T |
43044253 |
acttggtctgcttaagtcctccactgggatc |
43044283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 43079954 - 43079856
Alignment:
| Q |
1 |
gaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaac |
99 |
Q |
| |
|
|||| |||| |||||| |||||| |||||||| | ||||||||| | ||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43079954 |
gaaaaagccttgccacagtcgatatagaacccaatcctgggaacaagggctgcgagacgacggtgcagacttgacacttaatctgaaaaacaagttaac |
43079856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 38139079 - 38139007
Alignment:
| Q |
9 |
cctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
81 |
Q |
| |
|
||||||||| || ||| |||| |||||| | |||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
38139079 |
cctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa |
38139007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 43079802 - 43079762
Alignment:
| Q |
167 |
gatagatcttcctgcacggttcacttcttcttcaatgctga |
207 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
43079802 |
gatagatcatcctgcacggttcccttattcttcaatgctga |
43079762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 4230525 - 4230618
Alignment:
| Q |
11 |
tgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagac |
104 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| || |||||||| |||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaatccaaaaaacaacttaacaagac |
4230618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19965692 - 19965623
Alignment:
| Q |
1 |
gaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagac |
70 |
Q |
| |
|
||||| |||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
19965692 |
gaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgcaagacaacagtgcagac |
19965623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4618733 - 4618826
Alignment:
| Q |
1 |
gaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
96 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||| |||| | ||||||||| || | ||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
4618733 |
gaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg--atatgacagtgcagacttgacacttaacctgcaaaacaagtt |
4618826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University