View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_92 (Length: 237)
Name: NF10466_low_92
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12137725 - 12137503
Alignment:
| Q |
1 |
ttcccacaggtggactttcttctccctcagatggactttcgtctccattaggttgacttctttttctcttaggtgccatgtaattagcagatttttcccc |
100 |
Q |
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| T |
12137725 |
ttcccacaggtggactttcttctccctcagatggactttcgtctccgttaggttgacttctttttctcttaggtgccatgtaattagcagatttttcccc |
12137626 |
T |
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| Q |
101 |
cgaaataaaactttgaaaggtctcttccgcctcaactttgtttgaaatgttttttaggtttgtgataaggagatgaaagggaagggggaaaggatgcaaa |
200 |
Q |
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| T |
12137625 |
cgaaataaaactttgaaaggtctcttccgcctcaactttgtttgaaatgttttttaggtttgtgataaggagatgaaagggaagggggaaaggatgcaaa |
12137526 |
T |
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| Q |
201 |
taaaaaggcgcctcctactcctc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
12137525 |
taaaaaggcgcctcctactcctc |
12137503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 34530994 - 34530776
Alignment:
| Q |
2 |
tcccacaggtggactttcttctccctcagatggactttcgtctccattaggttgacttctttttctcttaggtgccatgtaattagcagatttttccccc |
101 |
Q |
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|||| |||||| |||||||||||||||| ||| ||||||||||| ||||||| || || ||||||||||||| |||| |||| | |||| |||||| || |
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| T |
34530994 |
tccctcaggtgaactttcttctccctcaaatgaactttcgtctcgattaggtggaatttcttttctcttaggttccatataatcaacaga-ttttcctcc |
34530896 |
T |
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| Q |
102 |
gaaataaaactttgaaaggtctcttccgc-ctcaactttgtttgaaatgttttt-----taggtttgtgataaggagatgaaagggaagggggaaaggat |
195 |
Q |
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| T |
34530895 |
gaaataaaactgtaaacagtctcttacactttcaactttgtttgaaatatttttcaacctatgtttgtgacaaggagacgaaagggaaaggggaaagatt |
34530796 |
T |
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| Q |
196 |
gcaaataaaaaggcgcctcc |
215 |
Q |
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| T |
34530795 |
gcaaataaaaaggcgcctcc |
34530776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 34531008 - 34531235
Alignment:
| Q |
2 |
tcccacaggtggactttcttctccctcagatggactttcgtctccattaggttgacttctttttctcttaggtgccatgtaattagcagatttttccccc |
101 |
Q |
| |
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|||| |||||||| |||||||||||||||||| ||||||||||||||||||| || || ||||||| |||||||| | |||| | |||| |||||| || |
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| T |
34531008 |
tccctcaggtggattttcttctccctcagatgaactttcgtctccattaggtggaatttcttttctcataggtgccttataatcaacaga-ttttcctcc |
34531106 |
T |
|
| Q |
102 |
gaaataaaactttgaaaggtctcttccgc-ctcaactttgtttgaaatgttttt-----taggtttgtgataaggagatgaaagggaagggggaaaggat |
195 |
Q |
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|||||||||| |||| |||||| | | || |||||||||||||| ||||| || || | ||| ||||||| ||||| ||| |||||||| | |
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| T |
34531107 |
aaaataaaactgtgaacaatctcttactctttcgactttgtttgaaatatttttcaacctatgtgtttgacaaggagacgaaagagaaaggggaaagact |
34531206 |
T |
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| Q |
196 |
gcaaataaaaaggcgcctcctactcctct |
224 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
34531207 |
acaaataaaaaggcgcctcctacacctct |
34531235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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