View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_low_93 (Length: 236)
Name: NF10466_low_93
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_93 |
 | |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11118415 - 11118650
Alignment:
| Q |
1 |
aatactactgtcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgt |
100 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11118415 |
aatacgactttcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatggtgattcagcaagacattgt |
11118514 |
T |
|
| Q |
101 |
ggaatgacaccagtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11118515 |
ggaatgacaccagtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaac |
11118614 |
T |
|
| Q |
201 |
taagatcaaggacagagatttcggatgcattgaggt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
11118615 |
taagatcaaggacagagatttcggatgcattgaggt |
11118650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 25522840 - 25522642
Alignment:
| Q |
13 |
ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgacacca |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
25522840 |
ctttgaaaagttacttggcaaagtgccatgaaatctattcatttgtagattcaaaacttgaagggatgttgattcagcaagacattgtggaatgatacca |
25522741 |
T |
|
| Q |
113 |
gtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaactaagatcaagg |
211 |
Q |
| |
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||||||||||||| ||||||||| | |||||||||||||||||||| |||||| ||||||| |||||| ||| |||||||||| ||||||||||||| |
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| T |
25522740 |
gtcaaattgttgtatcccaagttgagaaattcaagtgaactgatattgcaaacaaccaaaggtatttcatcatccagtaaattatcactaagatcaagg |
25522642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 24141109 - 24141286
Alignment:
| Q |
9 |
tgtcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgac |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||| ||| ||| |||| ||||||||||||||||| |
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| T |
24141109 |
tgtcctttgaaaagttacttggcaaagtgccatgaaatgtgttgatttgtagattcaaaactcgaagggatggtgaatcagaaagacattgtggaatgat |
24141208 |
T |
|
| Q |
109 |
accagtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccatt |
186 |
Q |
| |
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||| ||||||||||||| | ||||||| | |||||||||||||||||||| ||||| |||||| ||||||||||||| |
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|
| T |
24141209 |
accggtcaaattgttgtattccaagttaagaaattcaagtgaactgatattgcaaatagccaaatggatttcaccatt |
24141286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42123770 - 42123980
Alignment:
| Q |
1 |
aatactactgtcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgt |
100 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||| | |||| ||| ||||||||||| ||||||| |
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|
| T |
42123770 |
aatactacagttctttgaaaagttacttggcaaagtaccataaaacatgttcatttgtagattcaaaacttgaagggatggtgattcagcaaaacattgt |
42123869 |
T |
|
| Q |
101 |
ggaatgacaccagtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaac |
200 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| | ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
42123870 |
ggaatgataccagtcaaatcgttgtaacccaagttgagaaattgaagtgaactcatattgcaaactgccaaagggatttcaccattcagtaaattatgac |
42123969 |
T |
|
| Q |
201 |
taagatcaagg |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
42123970 |
taagatcaagg |
42123980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 41713372 - 41713168
Alignment:
| Q |
7 |
actgtcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatg |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| | |||| ||| | | | ||||||||||||||||||| |
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|
| T |
41713372 |
actgtcctttgaaaagttacttggcaaagtgccataaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaatg |
41713273 |
T |
|
| Q |
107 |
acaccagtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaactaagat |
206 |
Q |
| |
|
||||||||| ||||||||| ||||||| | |||| | |||||||| |||| ||||| || || | |||||||||| ||||| ||| |||| |||| |
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|
| T |
41713272 |
gtaccagtcaatttgttgtttgccaagttgagaaatcccagtgaactcatattgcaaattgacacaaagatttcaccacgtagtaagttataacttagat |
41713173 |
T |
|
| Q |
207 |
caagg |
211 |
Q |
| |
|
||||| |
|
|
| T |
41713172 |
caagg |
41713168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 34240354 - 34240156
Alignment:
| Q |
13 |
ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgacacca |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||| | |||| ||| | | | ||||||||||||||||||| ||| |
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|
| T |
34240354 |
ctttgaaaagttattaggcaaagtgccataaaagttgttcatttgtagatccaaaatttgaagggatggtaaattagcaagacattgtggaatgttacct |
34240255 |
T |
|
| Q |
113 |
gtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaactaagatcaagg |
211 |
Q |
| |
|
|| |||||||||| ||||||||| | ||||||||| ||||| | || ||||| || || || || | |||| ||||| |||||||||||||||||| |
|
|
| T |
34240254 |
gtgaaattgttgtgtcccaagttgagaaattcaagggaactcaaattgcaaattgacacagagaggttaccaacaagtaagttaaaactaagatcaagg |
34240156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 42129170 - 42129365
Alignment:
| Q |
16 |
tgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgacaccagtc |
115 |
Q |
| |
|
|||||||||||| |||||||| |||| |||| | |||||||| | || |||||| | |||||| | ||| | |||||||||||||||||||| | | ||| |
|
|
| T |
42129170 |
tgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggaacgatgaattagcaagacattgtggaatgatatctgtc |
42129269 |
T |
|
| Q |
116 |
aaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaactaagatcaagg |
211 |
Q |
| |
|
|||| |||| | ||||||| | |||| ||||||||| | || ||||| || | || || |||||| |||||| |||||||||||||||||| |
|
|
| T |
42129270 |
aaatgattgtgtgccaagttgagtaattgaagtgaactcaaattgcaaattgactcagagaggtcaccagccagtaagttaaaactaagatcaagg |
42129365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 41571828 - 41571706
Alignment:
| Q |
13 |
ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgacacca |
112 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||||||||||| || |||||| | |||| ||| | | | |||||||| ||||||||| || |
|
|
| T |
41571828 |
ctttgaaaagttacttggtaaagtgccataaaatttgttcatttgtaaatccaaaacttgaagggatgataagtttgcaagacaatgtggaatggtgcct |
41571729 |
T |
|
| Q |
113 |
gtcaaattgttgtttcccaagtt |
135 |
Q |
| |
|
||||| ||||||| | ||||||| |
|
|
| T |
41571728 |
gtcaatttgttgtgtgccaagtt |
41571706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 42118042 - 42118139
Alignment:
| Q |
10 |
gtcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatga |
107 |
Q |
| |
|
||||| |||||||||||| |||||||| |||| |||| | |||||||| | || |||||| | ||||| || ||| | |||||||||||||||||||| |
|
|
| T |
42118042 |
gtcctctgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggattgatgaattagcaagacattgtggaatga |
42118139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 34232617 - 34232414
Alignment:
| Q |
7 |
actgtcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatg |
106 |
Q |
| |
|
||||| |||||| |||||||| ||||||| ||||| |||| | ||||||||||||| ||| || | ||| ||| | | | ||||||| ||||||||||| |
|
|
| T |
34232617 |
actgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgtagggatgataaattagcaagatattgtggaatg |
34232518 |
T |
|
| Q |
107 |
acaccagtcaaattgttgtttcccaagttcaaaaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaactaagat |
206 |
Q |
| |
|
| ||| ||||| ||||||| ||||||| | |||| |||||| | ||| ||||| | ||||| ||| ||||| | |||||| ||| ||||||||| |
|
|
| T |
34232517 |
ataccggtcaatttgttgtgcgccaagttgagaaatcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagat |
34232418 |
T |
|
| Q |
207 |
caag |
210 |
Q |
| |
|
|||| |
|
|
| T |
34232417 |
caag |
34232414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 12248744 - 12248848
Alignment:
| Q |
13 |
ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgacacca |
112 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||| | | |||||||||||||||||||||| ||| |
|
|
| T |
12248744 |
ctttgagaagttacttggcaaagtgccatgaaatttgttcatttgtagattcaaaacttgaagggatgataaatcagcaagacattgtggaatgatacct |
12248843 |
T |
|
| Q |
113 |
gtcaa |
117 |
Q |
| |
|
||||| |
|
|
| T |
12248844 |
gtcaa |
12248848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 211
Target Start/End: Complemental strand, 32681735 - 32681567
Alignment:
| Q |
39 |
catgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatgacaccagtcaaattgttgtttcccaagttcaa |
138 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| | |||| ||| ||| | | ||||| ||||||||||| ||||||||||| ||||| || ||||| | |
|
|
| T |
32681735 |
catgaaatgtgttcatttgtagatttaaaactttaagggatggtgaattaataagacgttgtggaatgataccagtcaaatagttgtatctaaagttgag |
32681636 |
T |
|
| Q |
139 |
aaattcaagtgaactgatatcgcaaactgccaaagggatttcaccattcagtaaattaaaactaagatcaagg |
211 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
32681635 |
aaattcaagtga---catattgcaaactgccaaaggg-tttcaccatccagctgattaaaactaagatcaagg |
32681567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 11994187 - 11994132
Alignment:
| Q |
11 |
tcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaa |
66 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
11994187 |
tcctttgagaagttacttggcaaagtgccatgacatgtgttcatttgtagattcaa |
11994132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 8523391 - 8523483
Alignment:
| Q |
14 |
tttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatgttgattcagcaagacattgtggaatg |
106 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| | |||| ||| | | | ||||||||||||||||||| |
|
|
| T |
8523391 |
tttgaaaagttacttggcaaagttccatgaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaatg |
8523483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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