View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_99 (Length: 220)
Name: NF10466_low_99
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_99 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 7278765 - 7278557
Alignment:
| Q |
15 |
agagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaata---taat |
111 |
Q |
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| T |
7278765 |
agagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcat |
7278666 |
T |
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| Q |
112 |
tttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtgtaagg |
211 |
Q |
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| T |
7278665 |
tttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtgtaagg |
7278566 |
T |
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| Q |
212 |
aggagaatg |
220 |
Q |
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| T |
7278565 |
aggagaatg |
7278557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 7375074 - 7375282
Alignment:
| Q |
15 |
agagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaata---taat |
111 |
Q |
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| T |
7375074 |
agagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcat |
7375173 |
T |
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| Q |
112 |
tttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtgtaagg |
211 |
Q |
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| T |
7375174 |
tttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtgtaagg |
7375273 |
T |
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| Q |
212 |
aggagaatg |
220 |
Q |
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| T |
7375274 |
aggagaatg |
7375282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 7278849 - 7278789
Alignment:
| Q |
21 |
ggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggt |
81 |
Q |
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| T |
7278849 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggt |
7278789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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