View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10467_high_7 (Length: 227)
Name: NF10467_high_7
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10467_high_7 |
 | |
|
| [»] scaffold1089 (1 HSPs) |
| | |
|
| [»] scaffold1377 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14308559 - 14308728
Alignment:
| Q |
1 |
ctattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14308559 |
ctattttaaactttcaatgctatggaaatgatcttcgatttgcaacatatattttgcagaacgcaagacgtttgcaagacatgacaatcaacattactac |
14308658 |
T |
|
| Q |
101 |
tcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaaaaatt |
170 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14308659 |
ttacccttcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctatccaaaaatt |
14308728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 2467587 - 2467448
Alignment:
| Q |
26 |
aaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttg |
125 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||| || |||| ||| | |||||||| | | ||||||| |
|
|
| T |
2467587 |
aaatgatcttcgatttgcaacatatatattgcagaatgggagaattttacaaaacatgacaatcgacgttacaactagctcctcaaatggaaagcttttg |
2467488 |
T |
|
| Q |
126 |
ggaaagagacaaattatagaaggattatcctcctgtccaa |
165 |
Q |
| |
|
| |||||| ||||| || |||| ||||||||| ||||||| |
|
|
| T |
2467487 |
gaaaagagtcaaataattgaagaattatcctcttgtccaa |
2467448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 14438310 - 14438152
Alignment:
| Q |
31 |
atcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttgggaaa |
130 |
Q |
| |
|
||||| |||||||| |||||||||||||||| | || | ||||||||| ||||||||| || | |||||| | |||||| ||||||||| || |
|
|
| T |
14438310 |
atcttagatttgcatcatatattttgcagaatgcgaggcttttacaagatatgacaatcgacttaactactaagtcctcaataaacatgcttttgaaaag |
14438211 |
T |
|
| Q |
131 |
gagacaaattatagaaggattatcctcctgtccaaaaatttctcaag-atgtaaacttt |
188 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||||| ||||||| || ||||||||||| |
|
|
| T |
14438210 |
gagtcaaattatagaagaattatcctcttgtccaaggatttctccagcatgtaaacttt |
14438152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7872269 - 7872329
Alignment:
| Q |
1 |
ctattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa |
61 |
Q |
| |
|
||||||||||||| || ||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7872269 |
ctattttaaacttccatggctcagcaaatgatcttcgatttgcaacatatattttgcagaa |
7872329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7815433 - 7815493
Alignment:
| Q |
1 |
ctattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa |
61 |
Q |
| |
|
||||||||||||| ||| ||| | |||||||||||||||| || ||||||||||||||| |
|
|
| T |
7815433 |
ctattttaaacttacaaggctcggaaaatgatcttcgatttacaaaatatattttgcagaa |
7815493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 675 - 510
Alignment:
| Q |
33 |
cttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttgggaaaga |
132 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| | || ||||||||| ||||||||| || ||||||||| | |||||||| |||||||| | || || |
|
|
| T |
675 |
cttctatttgcaacatatattctgcagaatgctaggtttttacaagatatgacaatcgacgttactactcgctcctcaaatgaaatgcttttagaaagga |
576 |
T |
|
| Q |
133 |
gacaaattatagaaggattatcctcctgtccaaaaatttctcaag-atgtaaacttttatttgaat |
197 |
Q |
| |
|
| |||||||||||| ||| ||||| ||||||| ||||||| || |||||||||| |||||||| |
|
|
| T |
575 |
gtgaaattatagaagaattgtcctcttgtccaaggatttctccagcatgtaaacttacatttgaat |
510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 1401 - 1343
Alignment:
| Q |
31 |
atcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc |
89 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || | ||||||||| ||||||||| |
|
|
| T |
1401 |
atcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatgacaatc |
1343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 37996651 - 37996590
Alignment:
| Q |
28 |
atgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc |
89 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||| | |||||||||||||| |||| |
|
|
| T |
37996651 |
atgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgagaatc |
37996590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University