View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10467_high_9 (Length: 206)
Name: NF10467_high_9
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10467_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 19783305 - 19783135
Alignment:
| Q |
17 |
atcaggttctttacttcctattctaccaattatggtgcttgatatattccatgacaagcgaatactgaataatatggtcaacgatcaacagaagaatgtt |
116 |
Q |
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| T |
19783305 |
atcaggttctttacttcctattctaccaattatggtgcttgatatattccatgacaagcgaatacagaataatatggtcaac-------agaagaatgtt |
19783213 |
T |
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| Q |
117 |
ctttattggtttcatatcctgcattgttgttatagtagatacagtctaagcttaataaagccattgtttctctttcat |
194 |
Q |
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| T |
19783212 |
ctttattggtttcatgtcctgcattgttgttatagtagatacagtctaagcttaataaagccattgtttctctttcat |
19783135 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 32568544 - 32568605
Alignment:
| Q |
133 |
tcctgcattgttgttatagtagatacagtctaagcttaataaagccattgtttctctttcat |
194 |
Q |
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| T |
32568544 |
tcctgcattgttgttatagtagatacagtctaagcttaataaagccattgtttctctttcat |
32568605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 32568463 - 32568513
Alignment:
| Q |
20 |
aggttctttacttcctattctaccaattatggtgcttgatatattccatga |
70 |
Q |
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| T |
32568463 |
aggttctttacttcctattctatcaataacggtgtttgatacattccatga |
32568513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 4847870 - 4848009
Alignment:
| Q |
55 |
ttgatatattccatgacaagcgaatactgaataatatggtcaacgatcaacagaagaatgttctttattggtttcatatcctgcattgttgttatagtag |
154 |
Q |
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| T |
4847870 |
ttgatacattccatgacaagaaaaacctgaaaagtatgatgaatggtcaagagaagaatgttctctattggtttcatggtctgcattgttgttatagtag |
4847969 |
T |
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| Q |
155 |
atacagtctaagcttaataaagccattgtttctctttcat |
194 |
Q |
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| T |
4847970 |
atgctgtccaagcttaacaaagccattgtttctctttcat |
4848009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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