View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10467_low_1 (Length: 338)

Name: NF10467_low_1
Description: NF10467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10467_low_1
NF10467_low_1
[»] chr7 (15 HSPs)
chr7 (17-331)||(5900344-5900658)
chr7 (89-331)||(19293964-19294209)
chr7 (103-249)||(15668951-15669098)
chr7 (103-237)||(19323481-19323615)
chr7 (103-237)||(5555020-5555154)
chr7 (103-249)||(18300142-18300288)
chr7 (115-249)||(32574742-32574876)
chr7 (108-237)||(29126562-29126691)
chr7 (106-232)||(40858734-40858862)
chr7 (103-237)||(38141500-38141634)
chr7 (106-236)||(25289311-25289441)
chr7 (103-237)||(29626175-29626308)
chr7 (89-238)||(1031477-1031626)
chr7 (103-160)||(12621409-12621466)
chr7 (275-331)||(41768362-41768418)
[»] chr6 (7 HSPs)
chr6 (89-331)||(8753531-8753776)
chr6 (103-237)||(7093183-7093317)
chr6 (119-249)||(30975515-30975645)
chr6 (119-249)||(30981954-30982084)
chr6 (119-249)||(30988118-30988248)
chr6 (103-236)||(12912960-12913093)
chr6 (100-164)||(13737127-13737191)
[»] chr5 (4 HSPs)
chr5 (106-236)||(26369645-26369775)
chr5 (103-249)||(40973968-40974111)
chr5 (103-246)||(22581092-22581235)
chr5 (100-165)||(39365563-39365628)
[»] chr4 (10 HSPs)
chr4 (106-236)||(47591165-47591295)
chr4 (103-249)||(30598926-30599072)
chr4 (111-236)||(48639999-48640124)
chr4 (103-236)||(37871359-37871492)
chr4 (106-238)||(9897208-9897340)
chr4 (111-190)||(23108531-23108610)
chr4 (106-238)||(36652391-36652523)
chr4 (106-238)||(43498567-43498699)
chr4 (100-185)||(53585503-53585588)
chr4 (103-142)||(40346516-40346555)
[»] scaffold0432 (1 HSPs)
scaffold0432 (103-249)||(8360-8506)
[»] chr3 (6 HSPs)
chr3 (106-236)||(10437141-10437271)
chr3 (89-190)||(28432087-28432187)
chr3 (114-190)||(15029349-15029425)
chr3 (174-249)||(53459604-53459679)
chr3 (100-186)||(4487572-4487658)
chr3 (152-245)||(42671301-42671394)
[»] chr1 (6 HSPs)
chr1 (106-236)||(26676159-26676289)
chr1 (103-165)||(34548623-34548685)
chr1 (103-236)||(31912259-31912392)
chr1 (89-186)||(16968099-16968196)
chr1 (99-190)||(36535001-36535092)
chr1 (89-165)||(4534498-4534574)
[»] chr8 (5 HSPs)
chr8 (106-236)||(9932806-9932936)
chr8 (103-236)||(13090487-13090620)
chr8 (98-237)||(15728726-15728865)
chr8 (106-238)||(8444959-8445090)
chr8 (98-186)||(12912315-12912403)
[»] scaffold0300 (1 HSPs)
scaffold0300 (106-251)||(8847-8992)
[»] chr2 (1 HSPs)
chr2 (106-246)||(37647235-37647375)
[»] scaffold0036 (1 HSPs)
scaffold0036 (100-165)||(3437-3502)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 5900658 - 5900344
Alignment:
Q  17 accaaatacatccaacacccattaaaacttaagcaacaaagcaaattagaataccatttctttaacttgggaggaggcgccgattattagcttgggagga 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5900658 accaaatacatccaacacccaataaaacttaagcaacaaagcaaattagaataccatttctttaacttgggaggaggcgccgattattagcttgggagga 5900559  T
Q  117 ggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaacaaatat 216  Q
    ||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5900558 ggagaaggtgcaggagtattataattttttaactaatattgttttgcagcttcatatttctgacaggtggatttaacacttacatgtgactaacaaatat 5900459  T
Q  217 aatgtcacaagtgcttataatcctttgttgtcaatagttaacagtaatgttgccgctgctcatccaaccgaattttggaacaaagagatgcccctcaaaa 316  Q
    ||| ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5900458 aatatcacaagtgtttataatcctttgttgtcaatagtcaacaataatgttgccgctgctcattcaaccgaattttggaacaaagaggtgcccctcaaaa 5900359  T
Q  317 tcagcctctctgctt 331  Q
    ||||||||| |||||    
T  5900358 tcagcctctttgctt 5900344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 19293964 - 19294209
Alignment:
Q  89 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttctgatttt-ttaactaatattgttttgcagtctcatatttctgacaggtgga 187  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  19293964 ggaggcgccgattattatcttgggaggaggagaaggtgtgggagtgttgtgatttttttaactaatattgttttgcagcctcatatttctgacaggtgga 19294063  T
Q  188 tttaacacttccatgtgactaacaaatataatgtcacaagtgcttataatcctttgttgtcaatagttaacagtaatgttgccgctgctcatccaaccga 287  Q
    |||   |||| |||||||| |||| ||||||||||||||||||||||||||  ||| |||||| | | |||| |||| ||| ||| |||||| |||||||    
T  19294064 tttggaacttacatgtgacaaacagatataatgtcacaagtgcttataatcaattgatgtcaacaatcaacaataatattgtcgcagctcatgcaaccga 19294163  T
Q  288 --attttggaacaaagagatgcccctcaaaatcagcctctctgctt 331  Q
      |  ||||||||||||  ||||||||||| ||||||||| |||||    
T  19294164 ttaaattggaacaaagatgtgcccctcaaagtcagcctctttgctt 19294209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 15668951 - 15669098
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctga-ttttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccat 201  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||||||||||||||||  || || |||    
T  15668951 ttagcttgggaggaggagaaggtgcgggagtgttgtgatttttttaactaatattgttttgcagtctaatcattctgacaggtggatttggcatttacat 15669050  T
Q  202 gtgactaacaaatataatgtcacaagtgcttataatcctttgttgtca 249  Q
    |   | ||||||||||| ||||||||||||||||| |  |||||||||    
T  15669051 gcatccaacaaatataacgtcacaagtgcttataaccacttgttgtca 15669098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 19323481 - 19323615
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||  |||||||||||||||||  || || |||     
T  19323481 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattattttgcagtctaatcattctgacaggtggatttggcatttacatt 19323580  T
Q  203 tgactaacaaatataatgtcacaagtgcttataat 237  Q
       | ||||||||||||||||||||||||||||||    
T  19323581 catccaacaaatataatgtcacaagtgcttataat 19323615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 5555020 - 5555154
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||  |||||||||||||||||  || || |||     
T  5555020 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgtttagcagtctaatcattctgacaggtggatttggcatttacatt 5555119  T
Q  203 tgactaacaaatataatgtcacaagtgcttataat 237  Q
       | ||||||||||| ||||||||||||||||||    
T  5555120 catccaacaaatataacgtcacaagtgcttataat 5555154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 18300288 - 18300142
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||| ||  |||||||||||||||||  || || ||||    
T  18300288 ttagcttgggaggaggaaaaggtgcgggagtgttgtgatttcttaactattattgttttgcagtctaatcattctgacaggtggatttggcatttacatg 18300189  T
Q  203 tgactaacaaatataatgtcacaagtgcttataatcctttgttgtca 249  Q
    |  | ||||||||||| ||| ||||||||||||| |  |||||||||    
T  18300188 tatccaacaaatataacgtcgcaagtgcttataaccacttgttgtca 18300142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 32574742 - 32574876
Alignment:
Q  115 gaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaacaaat 214  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||  |||||||||||||||||  || || ||||   | |||||||    
T  32574742 gaggagaaggtgcgggagtgttgtaattttttaactaatattgttttgcaatctaattattctgacaggtggatttggcatttacatgcatccaacaaat 32574841  T
Q  215 ataatgtcacaagtgcttataatcctttgttgtca 249  Q
    ||||||||||||||||||||||||  |||||||||    
T  32574842 ataatgtcacaagtgcttataatcacttgttgtca 32574876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 29126691 - 29126562
Alignment:
Q  108 ttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgact 207  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||  |||||||||||||||||  || || |||    |     
T  29126691 ttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagtctaatcattctgacaggtggatttggcatttacattcatcc 29126592  T
Q  208 aacaaatataatgtcacaagtgcttataat 237  Q
    ||||||||||| ||||||||||||||||||    
T  29126591 aacaaatataacgtcacaagtgcttataat 29126562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 40858862 - 40858734
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||  |||||||||||||||||  ||||| ||||       
T  40858862 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagcctaatcattctgacaggtggatttggcacttacatgctt 40858763  T
Q  206 ctaacaa--atataatgtcacaagtgctt 232  Q
    | |||||  ||||||||||||||||||||    
T  40858762 ccaacaactatataatgtcacaagtgctt 40858734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 38141500 - 38141634
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||| ||  || ||||| ||||||||  || || |||     
T  38141500 ttagcttgggaggaggggaaggtgcaggagtgttgtgatattttaactaatattgttttgcagtctaatcattttgacaagtggatttggcatttacatt 38141599  T
Q  203 tgactaacaaatataatgtcacaagtgcttataat 237  Q
       | ||||||||||| ||| ||||||||||||||    
T  38141600 catccaacaaatataacgtcgcaagtgcttataat 38141634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 25289441 - 25289311
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||| ||  |||| ||| ||||||||  ||||| ||||       
T  25289441 gcttgggaggaggagaaggtgcgggagtattgtaatattttaactaatattgttttgcagtctgattattcttacaagtggatttggcacttacatgctt 25289342  T
Q  206 ctaacaaatataatgtcacaagtgcttataa 236  Q
    | ||||  ||||| ||||||| |||||||||    
T  25289341 ccaacacttataacgtcacaaatgcttataa 25289311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 29626175 - 29626308
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||||||||||||  |||||||| ||  |||||||||||||||||  || || |||     
T  29626175 ttagcttgggaggaggggaaggtgcgggagtgttgtga-tatttaactaatattgtaatgcagtctaatcattctgacaggtggatttggcatttacatt 29626273  T
Q  203 tgactaacaaatataatgtcacaagtgcttataat 237  Q
       | || |||||||| ||||||||||||||||||    
T  29626274 catccaagaaatataacgtcacaagtgcttataat 29626308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 1031477 - 1031626
Alignment:
Q  89 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggat 188  Q
    ||||||| || || || ||||||||||| ||||| |||||||| |||| |||| ||||| ||||||||||||||||| ||  |   | ||||||||||||    
T  1031477 ggaggcgtcgtttgttggcttgggaggaagagaaagtgcgggaatgttgtgatattttatctaatattgttttgcagcctactcactatgacaggtggat 1031576  T
Q  189 ttaacacttccatgtgactaacaaatataatgtcacaagtgcttataatc 238  Q
    ||  ||||| ||||   |  |||  ||||| |||||||||||||||||||    
T  1031577 ttggcacttgcatgcctcccacagttataaagtcacaagtgcttataatc 1031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 12621466 - 12621409
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttt 160  Q
    |||| ||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||    
T  12621466 ttagtttgggaggaggagcaggtgcgggagtgttgtgatattttatctaatattgttt 12621409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 41768418 - 41768362
Alignment:
Q  275 ctcatccaaccgaattttggaacaaagagatgcccctcaaaatcagcctctctgctt 331  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  41768418 ctcatgcaatcgaattttggaacaaagaggtgcccctcaaagtcagcctctttgctt 41768362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 89 - 331
Target Start/End: Complemental strand, 8753776 - 8753531
Alignment:
Q  89 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8753776 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttgtaattttttaactaatattattttgcagcctcatatttctgacaggtggat 8753677  T
Q  189 ttaacacttccatgtgactaacaaatataatgtcacaagtgcttataatcctttgttgtcaatagttaacagtaatgttgccgctgctcatc---caacc 285  Q
    ||  ||||| || ||||| ||||||||||||||||||||||| ||||||| |||| |||||| | | |||| |||| ||| |||| ||||||   |||||    
T  8753676 ttggcacttacacgtgacaaacaaatataatgtcacaagtgcctataatcatttgatgtcaacaatcaacaataatattgtcgctactcatcatgcaacc 8753577  T
Q  286 gaattttggaacaaagagatgcccctcaaaatcagcctctctgctt 331  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||    
T  8753576 gaattttggaacaaagaggtgcccctcaaagtcagcctctttgctt 8753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 7093183 - 7093317
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| ||  |||||||||||||||||  || || |||     
T  7093183 ttagcttgggaggaggggaaggtgcgggagtgttgtgatattttaactaatattgttttgcagtctaatcattctgacaggtggatttggcatttacatt 7093282  T
Q  203 tgactaacaaatataatgtcacaagtgcttataat 237  Q
       | ||||||||||| ||||||||||||||||||    
T  7093283 catccaacaaatataacgtcacaagtgcttataat 7093317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 30975645 - 30975515
Alignment:
Q  119 agaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaacaaatataa 218  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||| ||  || ||||||||  |||| |||||| |||| | | | |||||||||    
T  30975645 agaaagtgcgggagtgttgtgatattttaactaatattgttttgcagtctaattattttgacaggtaaatttgacacttacatgcgtccagcaaatataa 30975546  T
Q  219 tgtcacaagtgcttataatcctttgttgtca 249  Q
    |||||||||| ||||||||| ||||||||||    
T  30975545 tgtcacaagttcttataatcatttgttgtca 30975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 30982084 - 30981954
Alignment:
Q  119 agaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaacaaatataa 218  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||| ||  || ||||||||  |||| |||||| |||| | | | |||||||||    
T  30982084 agaaagtgcgggagtgttgtgatattttaactaatattgttttgcagtctaattattttgacaggtaaatttgacacttacatgcgtccagcaaatataa 30981985  T
Q  219 tgtcacaagtgcttataatcctttgttgtca 249  Q
    |||||||||| ||||||||| ||||||||||    
T  30981984 tgtcacaagttcttataatcatttgttgtca 30981954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 30988248 - 30988118
Alignment:
Q  119 agaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaacaaatataa 218  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||| ||  || ||||||||  |||| |||||| |||| | | | |||||||||    
T  30988248 agaaagtgcgggagtgttgtgatattttaactaatattgttttgcagtctaattattttgacaggtaaatttgacacttacatgcgtccagcaaatataa 30988149  T
Q  219 tgtcacaagtgcttataatcctttgttgtca 249  Q
    |||||||||| ||||||||| ||||||||||    
T  30988148 tgtcacaagttcttataatcatttgttgtca 30988118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 12913093 - 12912960
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||  |  | |||||||||||||||  ||||| ||||    
T  12913093 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagccttctcatcctgacaggtggatttggcacttacatg 12912994  T
Q  203 tgactaacaaatataatgtcacaagtgcttataa 236  Q
       | | ||  ||||||||| |||||||||||||    
T  12912993 cctccagcagttataatgtctcaagtgcttataa 12912960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 13737191 - 13737127
Alignment:
Q  100 ttattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgca 164  Q
    |||||||||| |||||||| | |||| | |||||||| |||  |||||| |||||||||||||||    
T  13737191 ttattagctttggaggaggtgcaggttcaggagtgttgtgagattttaattaatattgttttgca 13737127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 26369775 - 26369645
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||  || ||||||||||||||  ||||| ||||       
T  26369775 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagcctaatcattatgacaggtggatttggcacttacatgctt 26369676  T
Q  206 ctaacaaatataatgtcacaagtgcttataa 236  Q
    | ||||| |||||||||||||||||||||||    
T  26369675 ccaacaattataatgtcacaagtgcttataa 26369645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 40974111 - 40973968
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| ||  ||||||||||||||||| ||| || ||||    
T  40974111 ttagcttgggaggaggagaaggtgcgggagtattgtgatttcttaactaatattgttttgcagtctaatcattctgacaggtggatttgacatttacatg 40974012  T
Q  203 tgactaacaaatataatgtcacaagtgcttataatcctttgttgtca 249  Q
       | |||||||   | ||||||||||||||||| |  |||||||||    
T  40974011 catccaacaaat---acgtcacaagtgcttataaccacttgttgtca 40973968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 22581235 - 22581092
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||  || ||||||||||||||   |||| ||||    
T  22581235 ttagcgtgggaggaggagaaggtgcgggagtgttgtgatgttttaactaatattgttttgcaacctaatcattatgacaggtggatttggtacttacatg 22581136  T
Q  203 tgactaacaaatataatgtcacaagtgcttataatcctttgttg 246  Q
       | | ||  ||||||||||||||||||||||| | |||||||    
T  22581135 cctccatcatttataatgtcacaagtgcttataaccatttgttg 22581092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 39365563 - 39365628
Alignment:
Q  100 ttattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcag 165  Q
    ||||| ||||||||||||||||| ||| ||||||||||||  || |||  ||||||||||||||||    
T  39365563 ttattggcttgggaggaggagaaagtgagggagtgttctgtgttattacataatattgttttgcag 39365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 47591295 - 47591165
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||  || |||||||||||||| |||||| ||||       
T  47591295 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagcctaatcattatgacaggtggatttgacacttacatgctt 47591196  T
Q  206 ctaacaaatataatgtcacaagtgcttataa 236  Q
    | ||||| ||||| |||||||||||||||||    
T  47591195 ccaacaattataacgtcacaagtgcttataa 47591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 30599072 - 30598926
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  |||||| |  || ||||  || || ||||    
T  30599072 ttagcttcggaggaggagaaggtgcgggagtgttgtgattttttaactaatattgttttgcagtctaatcattctgatacttgaatttggcatttacatg 30598973  T
Q  203 tgactaacaaatataatgtcacaagtgcttataatcctttgttgtca 249  Q
       | ||||||||||| ||||||||||||||||| |  |||||||||    
T  30598972 catccaacaaatataacgtcacaagtgcttataaccacttgttgtca 30598926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 48639999 - 48640124
Alignment:
Q  111 ggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaac 210  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||  ||||| |||||||||||  ||||| ||||   | | |    
T  48639999 ggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcaccctaatcattctggcaggtggatttggcacttacatgcttccagc 48640098  T
Q  211 aaatataatgtcacaagtgcttataa 236  Q
    || ||||| |||||||||||||||||    
T  48640099 aattataacgtcacaagtgcttataa 48640124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 37871492 - 37871359
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||| |||||||||||| |||||||| |||| ||||| ||||||||||||||||| ||  |  | |||||||||||||||  ||||| ||||    
T  37871492 ttagcttgggagaaggagaaggtgcaggagtgttgtgatattttatctaatattgttttgcagccttctcatcctgacaggtggatttggcacttacatg 37871393  T
Q  203 tgactaacaaatataatgtcacaagtgcttataa 236  Q
       | | ||  |||||||||||||||||||||||    
T  37871392 cctccagcagttataatgtcacaagtgcttataa 37871359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 9897340 - 9897208
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    |||| |||||| ||||| |||| ||| |||| |||| ||||| ||||||||||||||||| ||  || |||||||||||||||||  ||||| |||||      
T  9897340 gcttaggaggaagagaaagtgctggaatgttgtgatattttatctaatattgttttgcagcctactaattctgacaggtggatttggcacttgcatgtct 9897241  T
Q  206 ctaacaaatataatgtcacaagtgcttataatc 238  Q
    | ||||  |||||  ||||||||||||||||||    
T  9897240 ccaacagttataacatcacaagtgcttataatc 9897208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 23108610 - 23108531
Alignment:
Q  111 ggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggattt 190  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||  |  | |||||||||||||||    
T  23108610 ggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagcctactcatcctgacaggtggattt 23108531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 36652523 - 36652391
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    |||||||| || ||||| |||| ||| |||| |||||||||| ||||||||||||||||| || ||  | |||||||||||||||  ||||| ||||       
T  36652523 gcttgggacgaagagaaagtgcaggaatgttgtgattttttatctaatattgttttgcagcctaatcatcctgacaggtggatttggcacttgcatgcct 36652424  T
Q  206 ctaacaaatataatgtcacaagtgcttataatc 238  Q
    | ||||  ||||| || ||||||||||||||||    
T  36652423 ccaacagttataaagttacaagtgcttataatc 36652391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 43498567 - 43498699
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||| ||||| |||| ||| |||| |||| ||||| ||||||||||||||||| || ||  |  ||||||||||||||  ||||| ||||       
T  43498567 gcttgggaggaagagaaagtgcaggaatgttgtgatattttatctaatattgttttgcagcctaatcatcttgacaggtggatttggcacttgcatgcct 43498666  T
Q  206 ctaacaaatataatgtcacaagtgcttataatc 238  Q
    | ||||  |||||||| ||||||||||||||||    
T  43498667 ccaacagttataatgttacaagtgcttataatc 43498699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 53585588 - 53585503
Alignment:
Q  100 ttattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtg 185  Q
    |||||||| |||||||||||| ||| ||| |||||   ||||||  ||||||||||| || ||||||||  |||||||||||||||    
T  53585588 ttattagcatgggaggaggagcaggcgcgtgagtgcagtgatttgctaactaatattattctgcagtctagtatttctgacaggtg 53585503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 40346555 - 40346516
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgatt 142  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  40346555 ttagcttgggaggaggggaaggtgcgggagtgttgtgatt 40346516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 8360 - 8506
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    ||||||| ||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||  |||||||||||||||||  || || ||||    
T  8360 ttagcttaggatgaggagaagttgcgggagtgttgtgatttcttaactaatattgttttgcagtctaatcattctgacaggtggatttggcatttacatg 8459  T
Q  203 tgactaacaaatataatgtcacaagtgcttataatcctttgttgtca 249  Q
    |  | |||||||||||  |||||||||||||||| |  |||||||||    
T  8460 tatccaacaaatataacttcacaagtgcttataaccacttgttgtca 8506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 10437271 - 10437141
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||  || ||||| ||||||||  ||||| ||||       
T  10437271 gcttgggaggaggagaaggtgcgggagtgttgtgatattttaactaatattgttttgcagcctaatcattatgacaagtggatttggcacttacatgctt 10437172  T
Q  206 ctaacaaatataatgtcacaagtgcttataa 236  Q
    | ||||| |||||||||||||||||||||||    
T  10437171 ccaacaattataatgtcacaagtgcttataa 10437141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 28432087 - 28432187
Alignment:
Q  89 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggat 188  Q
    |||||||||| |||||| ||| |||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| || |||||||  ||| ||||||    
T  28432087 ggaggcgccgtttattaacttaggaggaggagaaagtgcgggagtgctgtga-tttttaactaatattgttttgcagcctaatatttcaaacatgtggat 28432185  T
Q  189 tt 190  Q
    ||    
T  28432186 tt 28432187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 15029349 - 15029425
Alignment:
Q  114 ggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggattt 190  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||  || |   |||||||||||||||||    
T  15029349 ggaggagaaggtgcgggagtgttgtgatgttttaactaatattgttttgcaacctaaccattctgacaggtggattt 15029425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 53459679 - 53459604
Alignment:
Q  174 ttctgacaggtggatttaacacttccatgtgactaacaaatataatgtcacaagtgcttataatcctttgttgtca 249  Q
    |||||||||||||||||  || |||||||   ||||||||||||| ||||||||||||||||| |  |||||||||    
T  53459679 ttctgacaggtggatttgccatttccatgcatctaacaaatataacgtcacaagtgcttataaccacttgttgtca 53459604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 4487658 - 4487572
Alignment:
Q  100 ttattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtgg 186  Q
    ||||||||||||||||||||  ||||  |||||||   |||  |||||| ||||||||||||||||||| || ||||| ||||||||    
T  4487658 ttattagcttgggaggaggattaggttagggagtgcaatgagattttaattaatattgttttgcagtctaatctttctcacaggtgg 4487572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 42671394 - 42671301
Alignment:
Q  152 atattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtgactaacaaatataatgtcacaagtgcttataatcctttgtt 245  Q
    ||||| ||||||| ||| ||  |||||| | |||||||| ||| || |||||| | ||||| ||||||||||||| ||||||||||| ||||||    
T  42671394 atattattttgcattctaatcattctgaaaagtggatttgacatttacatgtgtccaacaactataatgtcacaaatgcttataatcatttgtt 42671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 26676159 - 26676289
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| || ||  || ||||||||||||||  ||||| ||||       
T  26676159 gcttgggaggaggagaaggtgctggagtgttgtgatattttaactaatattgttttgcagcctaatcattatgacaggtggatttggcacttacatgctt 26676258  T
Q  206 ctaacaaatataatgtcacaagtgcttataa 236  Q
    | ||||| |||||||||||||||||||||||    
T  26676259 ccaacaactataatgtcacaagtgcttataa 26676289  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 34548623 - 34548685
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcag 165  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  34548623 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcag 34548685  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 31912392 - 31912259
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    ||||| ||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||  || ||  |||||| |||||||||| || ||| ||||    
T  31912392 ttagcatgggaggaggagaaggtgcgggaatgttgtgatattttatctaatattgttttgcaacctaatcattctgataggtggatttcacccttacatg 31912293  T
Q  203 tgactaacaaatataatgtcacaagtgcttataa 236  Q
       | | ||  |||||||||||||||||||||||    
T  31912292 cctccagcagttataatgtcacaagtgcttataa 31912259  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 16968196 - 16968099
Alignment:
Q  89 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtgg 186  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| |  || ||||||  |||  ||||||||||| || || ||||||||||||||    
T  16968196 ggaggcgccgattattagcttgggaggaggagaaggtacgcgagtgatgagactttttatttaacgttgttttgcagcctaatctttctgacaggtgg 16968099  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 36535092 - 36535001
Alignment:
Q  99 attattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggattt 190  Q
    |||||||||||||||||| ||| || || |||||||||  ||| |||||| ||| |||| ||||||  ||| | ||||||||| ||||||||    
T  36535092 attattagcttgggaggaagagcagatgagggagtgttgcgatcttttaattaacattgatttgcaacctcttgtttctgacatgtggattt 36535001  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 4534498 - 4534574
Alignment:
Q  89 ggaggcgccgattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcag 165  Q
    |||| |||||||| |||||||||||||||||||  || |||||||| |||   || ||| ||||| |||||||||||    
T  4534498 ggagacgccgattgttagcttgggaggaggagagtgttcgggagtgctctatgttattatctaatgttgttttgcag 4534574  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 9932936 - 9932806
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||  | ||  || ||||||||||||||  ||||| ||||       
T  9932936 gcttgggaggaggataaggtgcgggagtgttgtgatattttaactaatattgttttgcagcttaatcattatgacaggtggatttggcacttacatgctt 9932837  T
Q  206 ctaacaaatataatgtcacaagtgcttataa 236  Q
    | ||||| |||||||||||||||||||||||    
T  9932836 ccaacaattataatgtcacaagtgcttataa 9932806  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 13090620 - 13090487
Alignment:
Q  103 ttagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatg 202  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||  |  | |||||||||||||||  ||||| ||||    
T  13090620 ttagcttgggaggaggagaaggtgcgggagtgttgtgatattttatctaatattgttttgcagccttctcatcctgacaggtggatttggcacttacatg 13090521  T
Q  203 tgactaacaaatataatgtcacaagtgcttataa 236  Q
       | | ||  ||||||||| |||||||||||||    
T  13090520 cctccagcagttataatgtctcaagtgcttataa 13090487  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 15728726 - 15728865
Alignment:
Q  98 gattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacactt 197  Q
    ||||||||||||||||||||||| |||| | |||||||| |||  |||||| ||| |||||| | ||| || || ||||||||| ||||||||  || ||    
T  15728726 gattattagcttgggaggaggagtaggttcaggagtgttgtgagattttaattaacattgttctacagcctaatttttctgacaagtggatttggcattt 15728825  T
Q  198 ccatgtgactaacaaatataatgtcacaagtgcttataat 237  Q
     ||||   | ||||| ||||||||||||||||||||||||    
T  15728826 gcatgcttccaacaattataatgtcacaagtgcttataat 15728865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 8445090 - 8444959
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||| ||||| |||| ||| |||| |||||||||| || |||||||||||||| || ||  | |||||||||||||||  ||||| ||||       
T  8445090 gcttgggaggaagagaaagtgcaggaatgttgtgattttttatct-atattgttttgcagcctaatcatcctgacaggtggatttggcacttgcatgcct 8444992  T
Q  206 ctaacaaatataatgtcacaagtgcttataatc 238  Q
    | ||||  ||||| || ||||||||||||||||    
T  8444991 ccaacagttataaagttacaagtgcttataatc 8444959  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 12912315 - 12912403
Alignment:
Q  98 gattattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtgg 186  Q
    |||| ||||||| ||| || ||| ||||  ||||||||  |||| ||||||| |||||||||||||| ||| |||||||||||| ||||    
T  12912315 gattgttagcttaggaagaagagcaggttagggagtgtagtgatattttaacaaatattgttttgcaatctaatatttctgacatgtgg 12912403  T

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Target: scaffold0300 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 8847 - 8992
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    |||||||| || ||||| |||| ||| |||| |||||||||| ||||||||||||||||| || ||  | |||||||||||||||  ||||| ||||       
T  8847 gcttgggaagaagagaaagtgcaggaatgttgtgattttttatctaatattgttttgcagcctaatcatcctgacaggtggatttggcacttgcatgcct 8946  T
Q  206 ctaacaaatataatgtcacaagtgcttataatcctttgttgtcaat 251  Q
    | ||||  |||||  | |||||||||||||||| | ||||| ||||    
T  8947 ccaacagttataaaattacaagtgcttataatcatctgttgacaat 8992  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 37647235 - 37647375
Alignment:
Q  106 gcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcagtctcatatttctgacaggtggatttaacacttccatgtga 205  Q
    ||||||||||| ||||| |||| ||| ||||  ||| ||||| ||| ||||||||||||| || ||  |  ||||||||||||||  ||||| ||||       
T  37647235 gcttgggaggaagagaaagtgcaggaatgttgcgatattttatctagtattgttttgcagcctaatcatcttgacaggtggatttggcacttgcatgcct 37647334  T
Q  206 ctaacaaatataatgtcacaagtgcttataatcctttgttg 246  Q
    | ||||  ||||| || |||||||||||||||| |||||||    
T  37647335 ccaacagttataaagttacaagtgcttataatcatttgttg 37647375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 3437 - 3502
Alignment:
Q  100 ttattagcttgggaggaggagaaggtgcgggagtgttctgattttttaactaatattgttttgcag 165  Q
    |||||||| ||||||||||| |  ||| |||||||||||| ||| ||| |||| ||||||||||||    
T  3437 ttattagcatgggaggaggatagtgtgagggagtgttctgctttattatctaacattgttttgcag 3502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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